[Gate-users] cluster run on GATE_v9

[Xinjie Cao]

Sorry, "./gjs".

On Wed, Jul 8, 2020 at 2:26 PM Xinjie Cao <xinjie.cao at stonybrook.edu> wrote:

> You should type ./jgs for some linux system. The "gjs>" is another system
> default command.
>
> Best,
>
> On Wed, Jul 8, 2020 at 1:52 PM Hadi Rezaei <hrezaei.m.ph at gmail.com> wrote:
>
>> Hi,
>> Thank you for responding.
>> after type gjs in terminal I get "gjs>".
>> Also, I installed gjs and gjm as follow:
>>
>> cd jobsplittermake
>>
>>
>> cd filemergermake
>>
>> Thank you.
>> Best,
>>
>> On Wed, Jul 8, 2020 at 7:17 PM Ville-Veikko Wettenhovi <
>> ville-veikko.wettenhovi at uef.fi> wrote:
>>
>>> Hi,
>>>
>>> If you simply type gjs in terminal, what do you get? You may have the
>>> gjs-package installed (https://packages.ubuntu.com/focal/gjs) that
>>> probably takes precedence over the GATE gjs in which case you need to call
>>> the GATE gjs with the full path.
>>>
>>> Regards,
>>> Ville-Veikko Wettenhovi
>>> ------------------------------
>>> *From:* Gate-users <gate-users-bounces at lists.opengatecollaboration.org>
>>> on behalf of Hadi Rezaei <hrezaei.m.ph at gmail.com>
>>> *Sent:* Wednesday, July 8, 2020 14:48
>>> *To:* gate-users at lists.opengatecollaboration.org <
>>> gate-users at lists.opengatecollaboration.org>
>>> *Subject:* [Gate-users] cluster run on GATE_v9
>>>
>>> Dear all
>>> I am trying to run cluster GATE_v9 but after type "gjs -numberofsplits 5
>>> -clusterplatform openmosix -a
>>> /media/rezaei/Data/GATE_v9/gate/Gate/benchmarks/benchPET/HADI/example1.root
>>> ROOT_FILE example.mac"   I found "*Unknown option -numberofsplits*"
>>>
>>> I enter in .bashrc:
>>> export
>>> GC_DOT_GATE_DIR=/media/rezaei/Data/GATE_v9/gate/Gate/benchmarks/benchPET/HADI
>>> export
>>> GC_GATE_EXE_DIR=/media/rezaei/Data/GATE_v9/gate/Gate/cluster_tools/jobsplitter/gjs
>>> and also in mac file I added the command :
>>> /gate/cluster/setTimeSplitHalflife 6586.2 s
>>> I used this link guidance step by step:
>>>
>>> https://opengate.readthedocs.io/en/latest/how_to_use_gate_on_a_cluster.html <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fopengate.readthedocs.io%2Fen%2Flatest%2Fhow_to_use_gate_on_a_cluster.html&data=02%7C01%7C%7Cca0c08fe95894b5f3db908d82334d88b%7C87879f2e73044bf2baf263e7f83f3c34%7C0%7C1%7C637298057177827610&sdata=wF4%2FLi5cqR25mxsxk8wUU%2Fl5x%2BlndDfzkbYGudgbHGo%3D&reserved=0>
>>>
>>> How can I fix this problem?
>>> any help will be highly appreciated. Thank you
>>>
>>>
>>>
>>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>
>
> --
> *....................................................*
> *Xinjie Cao*
> *M.E. / Ph.D. student*
> *Research Project Assistant*
> *Department of Electrical and Computer Engineering & Radiology *
> *Novel Medical Imaging Technologies Lab*
> *Health Science Center Level 8*
> *Stony Brook, NY 11794-8460 *
> *Tel: +1 (631)202-9445*
> you.stonybrook.edu/goldan/people/
> *email: **xinjie.cao at stonybroo*k.edu <xinjie.cao at stonybrook.edu>
>
>
> *....................................................*
> It is prohibited to distribute or publish the files attached to any other
> people unless you get permission from the writer himself. All rights
> reserved.
>
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