[Gate-users] cluster run on GATE_v9

[Xinjie Cao]

You should type ./jgs for some linux system. The "gjs>" is another system
default command.

Best,

On Wed, Jul 8, 2020 at 1:52 PM Hadi Rezaei <hrezaei.m.ph at gmail.com> wrote:

> Hi,
> Thank you for responding.
> after type gjs in terminal I get "gjs>".
> Also, I installed gjs and gjm as follow:
>
> cd jobsplittermake
>
>
> cd filemergermake
>
> Thank you.
> Best,
>
> On Wed, Jul 8, 2020 at 7:17 PM Ville-Veikko Wettenhovi <
> ville-veikko.wettenhovi at uef.fi> wrote:
>
>> Hi,
>>
>> If you simply type gjs in terminal, what do you get? You may have the
>> gjs-package installed (https://packages.ubuntu.com/focal/gjs) that
>> probably takes precedence over the GATE gjs in which case you need to call
>> the GATE gjs with the full path.
>>
>> Regards,
>> Ville-Veikko Wettenhovi
>> ------------------------------
>> *From:* Gate-users <gate-users-bounces at lists.opengatecollaboration.org>
>> on behalf of Hadi Rezaei <hrezaei.m.ph at gmail.com>
>> *Sent:* Wednesday, July 8, 2020 14:48
>> *To:* gate-users at lists.opengatecollaboration.org <
>> gate-users at lists.opengatecollaboration.org>
>> *Subject:* [Gate-users] cluster run on GATE_v9
>>
>> Dear all
>> I am trying to run cluster GATE_v9 but after type "gjs -numberofsplits 5
>> -clusterplatform openmosix -a
>> /media/rezaei/Data/GATE_v9/gate/Gate/benchmarks/benchPET/HADI/example1.root
>> ROOT_FILE example.mac"   I found "*Unknown option -numberofsplits*"
>>
>> I enter in .bashrc:
>> export
>> GC_DOT_GATE_DIR=/media/rezaei/Data/GATE_v9/gate/Gate/benchmarks/benchPET/HADI
>> export
>> GC_GATE_EXE_DIR=/media/rezaei/Data/GATE_v9/gate/Gate/cluster_tools/jobsplitter/gjs
>> and also in mac file I added the command :
>> /gate/cluster/setTimeSplitHalflife 6586.2 s
>> I used this link guidance step by step:
>>
>> https://opengate.readthedocs.io/en/latest/how_to_use_gate_on_a_cluster.html <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fopengate.readthedocs.io%2Fen%2Flatest%2Fhow_to_use_gate_on_a_cluster.html&data=02%7C01%7C%7Cca0c08fe95894b5f3db908d82334d88b%7C87879f2e73044bf2baf263e7f83f3c34%7C0%7C1%7C637298057177827610&sdata=wF4%2FLi5cqR25mxsxk8wUU%2Fl5x%2BlndDfzkbYGudgbHGo%3D&reserved=0>
>>
>> How can I fix this problem?
>> any help will be highly appreciated. Thank you
>>
>>
>>
>> _______________________________________________
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-- 
*....................................................*
*Xinjie Cao*
*M.E. / Ph.D. student*
*Research Project Assistant*
*Department of Electrical and Computer Engineering & Radiology *
*Novel Medical Imaging Technologies Lab*
*Health Science Center Level 8*
*Stony Brook, NY 11794-8460 *
*Tel: +1 (631)202-9445*
you.stonybrook.edu/goldan/people/
*email: **xinjie.cao at stonybroo*k.edu <xinjie.cao at stonybrook.edu>


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