[Gate-users] cluster run on GATE_v9

[Hadi Rezaei]

Hi Xinjie
Thank you for your reply.
I have ubuntu 20.04
After type ./gjs I found "bash: ./gjs: No such file or directory"
indeed it can not find gjs. But I installed it.
Best,

On Wed, Jul 8, 2020 at 10:57 PM Xinjie Cao <xinjie.cao at stonybrook.edu>
wrote:

> Sorry, "./gjs".
>
> On Wed, Jul 8, 2020 at 2:26 PM Xinjie Cao <xinjie.cao at stonybrook.edu>
> wrote:
>
>> You should type ./jgs for some linux system. The "gjs>" is another system
>> default command.
>>
>> Best,
>>
>> On Wed, Jul 8, 2020 at 1:52 PM Hadi Rezaei <hrezaei.m.ph at gmail.com>
>> wrote:
>>
>>> Hi,
>>> Thank you for responding.
>>> after type gjs in terminal I get "gjs>".
>>> Also, I installed gjs and gjm as follow:
>>>
>>> cd jobsplittermake
>>>
>>>
>>> cd filemergermake
>>>
>>> Thank you.
>>> Best,
>>>
>>> On Wed, Jul 8, 2020 at 7:17 PM Ville-Veikko Wettenhovi <
>>> ville-veikko.wettenhovi at uef.fi> wrote:
>>>
>>>> Hi,
>>>>
>>>> If you simply type gjs in terminal, what do you get? You may have the
>>>> gjs-package installed (https://packages.ubuntu.com/focal/gjs) that
>>>> probably takes precedence over the GATE gjs in which case you need to call
>>>> the GATE gjs with the full path.
>>>>
>>>> Regards,
>>>> Ville-Veikko Wettenhovi
>>>> ------------------------------
>>>> *From:* Gate-users <gate-users-bounces at lists.opengatecollaboration.org>
>>>> on behalf of Hadi Rezaei <hrezaei.m.ph at gmail.com>
>>>> *Sent:* Wednesday, July 8, 2020 14:48
>>>> *To:* gate-users at lists.opengatecollaboration.org <
>>>> gate-users at lists.opengatecollaboration.org>
>>>> *Subject:* [Gate-users] cluster run on GATE_v9
>>>>
>>>> Dear all
>>>> I am trying to run cluster GATE_v9 but after type "gjs -numberofsplits
>>>> 5 -clusterplatform openmosix -a
>>>> /media/rezaei/Data/GATE_v9/gate/Gate/benchmarks/benchPET/HADI/example1.root
>>>> ROOT_FILE example.mac"   I found "*Unknown option -numberofsplits*"
>>>>
>>>> I enter in .bashrc:
>>>> export
>>>> GC_DOT_GATE_DIR=/media/rezaei/Data/GATE_v9/gate/Gate/benchmarks/benchPET/HADI
>>>> export
>>>> GC_GATE_EXE_DIR=/media/rezaei/Data/GATE_v9/gate/Gate/cluster_tools/jobsplitter/gjs
>>>> and also in mac file I added the command :
>>>> /gate/cluster/setTimeSplitHalflife 6586.2 s
>>>> I used this link guidance step by step:
>>>>
>>>> https://opengate.readthedocs.io/en/latest/how_to_use_gate_on_a_cluster.html <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fopengate.readthedocs.io%2Fen%2Flatest%2Fhow_to_use_gate_on_a_cluster.html&data=02%7C01%7C%7Cca0c08fe95894b5f3db908d82334d88b%7C87879f2e73044bf2baf263e7f83f3c34%7C0%7C1%7C637298057177827610&sdata=wF4%2FLi5cqR25mxsxk8wUU%2Fl5x%2BlndDfzkbYGudgbHGo%3D&reserved=0>
>>>>
>>>> How can I fix this problem?
>>>> any help will be highly appreciated. Thank you
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>> Gate-users mailing list
>>> Gate-users at lists.opengatecollaboration.org
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>>
>>
>> --
>> *....................................................*
>> *Xinjie Cao*
>> *M.E. / Ph.D. student*
>> *Research Project Assistant*
>> *Department of Electrical and Computer Engineering & Radiology *
>> *Novel Medical Imaging Technologies Lab*
>> *Health Science Center Level 8*
>> *Stony Brook, NY 11794-8460 *
>> *Tel: +1 (631)202-9445*
>> you.stonybrook.edu/goldan/people/
>> *email: **xinjie.cao at stonybroo*k.edu <xinjie.cao at stonybrook.edu>
>>
>>
>> *....................................................*
>> It is prohibited to distribute or publish the files attached to any other
>> people unless you get permission from the writer himself. All rights
>> reserved.
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20200709/f5ebfd85/attachment.html>