[Gate-users] VGate

[tmerlin]

Hi Howard,

In the macros/VoxelizedSource.mac file, try to replace the following lines:

//gate/source/voxel_brain/reader/insert interfile//
///gate/source/voxel_brain/interfileReader/translator/insert range//
///gate/source/voxel_brain/interfileReader/rangeTranslator/readTable 
./phantom/activity_range.dat//
///gate/source/voxel_brain/interfileReader/rangeTranslator/describe 1//
///gate/source/voxel_brain/interfileReader/readFile 
./phantom/brain_phantom.h33/

by:

//gate/source/voxel_brain/reader/insert image//
///gate/source/voxel_brain/imageReader/translator/insert range//
///gate/source/voxel_brain/imageReader/rangeTranslator/readTable 
./phantom/activity_range.dat//
///gate/source/voxel_brain/imageReader/rangeTranslator/describe 1//
///gate/source/voxel_brain/imageReader/readFile ./phantom/brain_phantom.h33/

Hope this works for you


Cheers,

Thibaut Merlin


On 12/08/2019 19:52, Howard wrote:
> Hi David,
>
> Thank you for taking the time to reply to my question. I am using Gate 
> v8.2 and was trying to run the example provided in the following 
> training session:
>
> http://www.opengatecollaboration.org/Materials2015/PracticalExercises2015/VoxelizedSources&Phantoms 
>
>
> The error was similar to the one reported by PAT back in August 2018:
>
> GateSourceVoxelInterfileReader.cc (l.25): 
> GateSourceVoxelInterfileReader is obsolete, use 
> GateSourceVoxelImageReader instead!
>
> I wonder whether there is a workaround to this error. Many thanks!
>
> Howard
>
>
>
> On Mon, Aug 12, 2019 at 4:51 AM David Boersma <david.boersma at acmit.at 
> <mailto:david.boersma at acmit.at>> wrote:
>
>     Hi Howard and PAT,
>
>
>     Which version of VGate are you using? Could you try the latest
>     release (8.2, released in February)?
>
>
>     And are you referring to the "shared disk" issue or the 
>     "interfile" issue?
>
>
>     If the latter: I searched the current version of GateContrib and I
>     do not find any references to "GateSourceVoxelInterfileReader".
>     It's possible that this has been fixed in the meantime. So then
>     the solution would be to run "git pull" in your GateContrib clone
>     and check what happened to the example that you are referring to
>     (I'm not sure which example that is). It's possible that this
>     particular example has actually been removed in the meantime.
>
>
>     I hope that this helps a bit. If it doesn't, then I hope that an
>     imaging expert (which I am not) will come back from vacation soon
>     and give a better answer your question. 😊
>
>
>     Good luck,
>
>     David Boersma
>
>     ------------------------------------------------------------------------
>     *Von:* Gate-users
>     <gate-users-bounces at lists.opengatecollaboration.org
>     <mailto:gate-users-bounces at lists.opengatecollaboration.org>> im
>     Auftrag von Howard <lomahu at gmail.com <mailto:lomahu at gmail.com>>
>     *Gesendet:* Freitag, 9. August 2019 22:50:10
>     *An:* gate-users at lists.opengatecollaboration.org
>     <mailto:gate-users at lists.opengatecollaboration.org>
>     *Betreff:* Re: [Gate-users] VGate
>
>
>       Dear Gate-users,
>
>     Does anyone happen to know the workaround the problem as PAT
>     reported back in August, 2018? Thanks very much.
>
>
>       Howard
>
>
>       [Gate-users] VGate
>
>     *P. T.*ptpphysics at gmail.com
>     <mailto:gate-users%40lists.opengatecollaboration.org?Subject=Re%3A%20%5BGate-users%5D%20VGate&In-Reply-To=%3CCAJ9ZRTLFukiRprD_UOQAjEcxVo_POgumWpUGzTA%3DrxDU1eBkMg%40mail.gmail.com%3E>
>     /Sat Aug 25 12:14:02 CEST 2018/
>
>       * Previous message: [Gate-users] Physics list usage for medical
>         imaging simulations
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>
>     ------------------------------------------------------------------------
>
>     Dear Gate expert,
>
>     Shared folder not working in new vgate. Furthermore, Example related
>     to Voxelized Phantom _Source don't execute correctly and show error:
>
>     GateSourceVoxelInterfileReader.cc (l.25):
>     GateSourceVoxelInterfileReader is obsolete, use
>     GateSourceVoxelImageReader instead!
>
>     Regards,
>     PAT
>
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-- 
Thibaut MERLIN -- PhD

Docteur en Imagerie Médicale au Laboratoire de Traitement de l'Information Medicale (LaTIM - INSERM UMR 1101)
Institut Brestois de recherche en Bio-Santé (IBRBS)
12 Avenue Foch, 29200 Brest, FRANCE
Tel: 06.75.12.24.90

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