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<p>Hi Howard,</p>
<p>In the macros/VoxelizedSource.mac file, try to replace the
following lines:</p>
<p><i>/gate/source/voxel_brain/reader/insert interfile</i><i><br>
</i><i>/gate/source/voxel_brain/interfileReader/translator/insert
range</i><i><br>
</i><i>/gate/source/voxel_brain/interfileReader/rangeTranslator/readTable
./phantom/activity_range.dat</i><i><br>
</i><i>/gate/source/voxel_brain/interfileReader/rangeTranslator/describe
1</i><i><br>
</i><i>/gate/source/voxel_brain/interfileReader/readFile
./phantom/brain_phantom.h33</i></p>
<p>by:</p>
<p><i>/gate/source/voxel_brain/reader/insert image</i><i><br>
</i><i>/gate/source/voxel_brain/imageReader/translator/insert
range</i><i><br>
</i><i>/gate/source/voxel_brain/imageReader/rangeTranslator/readTable
./phantom/activity_range.dat</i><i><br>
</i><i>/gate/source/voxel_brain/imageReader/rangeTranslator/describe
1</i><i><br>
</i><i>/gate/source/voxel_brain/imageReader/readFile
./phantom/brain_phantom.h33</i><br>
</p>
<p>Hope this works for you</p>
<p><br>
</p>
<p>Cheers,<br>
</p>
<p>Thibaut Merlin<br>
</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 12/08/2019 19:52, Howard wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CAKr9h5UAA6n=BkOAomWV0Xb_P_VFTD8fw6=jBZOFg7vYEP+G=g@mail.gmail.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div dir="ltr">Hi David,
<div><br>
</div>
<div>Thank you for taking the time to reply to my question. I am
using Gate v8.2 and was trying to run the example provided in
the following training session:</div>
<div><br>
</div>
<div><a
href="http://www.opengatecollaboration.org/Materials2015/PracticalExercises2015/VoxelizedSources&Phantoms"
moz-do-not-send="true">http://www.opengatecollaboration.org/Materials2015/PracticalExercises2015/VoxelizedSources&Phantoms</a> </div>
<div><br>
</div>
<div>The error was similar to the one reported by PAT back in
August 2018:</div>
<div><br>
</div>
<div><span style="color:rgb(0,0,0);font-family:"Courier
New"">GateSourceVoxelInterfileReader</span><span
style="color:rgb(0,0,0);font-family:"Courier New"">.cc
(l.25): </span><span
style="color:rgb(0,0,0);font-family:"Courier New"">GateSourceVoxelInterfileReader
is obsolete, use </span><span
style="color:rgb(0,0,0);font-family:"Courier New"">GateSourceVoxelImageReader
instead!</span><br
style="color:rgb(0,0,0);font-family:"Courier New"">
</div>
<div><br>
</div>
<div>I wonder whether there is a workaround to this error. Many
thanks!</div>
<div><br>
</div>
<div>Howard</div>
<div><br>
</div>
<div> <br>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Mon, Aug 12, 2019 at 4:51
AM David Boersma <<a href="mailto:david.boersma@acmit.at"
moz-do-not-send="true">david.boersma@acmit.at</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div id="gmail-m_-6281220414420716261divtagdefaultwrapper"
style="font-size:12pt;color:rgb(0,0,0);font-family:Calibri,Helvetica,sans-serif"
dir="ltr">
<p>Hi Howard and PAT,</p>
<p><br>
</p>
<p>Which version of VGate are you using? Could you try the
latest release (8.2, released in February)?<br>
</p>
<p><br>
</p>
<p>And are you referring to the "shared disk" issue or
the "interfile" issue?</p>
<p><br>
</p>
<p>If the latter: I searched the current version of
GateContrib and I do not find any references to "<span>GateSourceVoxelInterfileReader</span>".
It's possible that this has been fixed in the meantime.
So then the solution would be to run "git pull" in your
GateContrib clone and check what happened to the example
that you are referring to (I'm not sure which example
that is). It's possible that this particular example has
actually been removed in the meantime.</p>
<p><br>
</p>
<p>I hope that this helps a bit. If it doesn't, then I
hope that an imaging expert (which I am not) will come
back from vacation soon and give a better answer your
question.
<span>😊</span><br>
</p>
<p><br>
</p>
<p>Good luck,</p>
<p>David Boersma<br>
</p>
</div>
<hr style="display:inline-block;width:98%">
<div id="gmail-m_-6281220414420716261divRplyFwdMsg"
dir="ltr"><font style="font-size:11pt" face="Calibri,
sans-serif" color="#000000"><b>Von:</b> Gate-users <<a
href="mailto:gate-users-bounces@lists.opengatecollaboration.org"
target="_blank" moz-do-not-send="true">gate-users-bounces@lists.opengatecollaboration.org</a>>
im Auftrag von Howard <<a
href="mailto:lomahu@gmail.com" target="_blank"
moz-do-not-send="true">lomahu@gmail.com</a>><br>
<b>Gesendet:</b> Freitag, 9. August 2019 22:50:10<br>
<b>An:</b> <a
href="mailto:gate-users@lists.opengatecollaboration.org"
target="_blank" moz-do-not-send="true">gate-users@lists.opengatecollaboration.org</a><br>
<b>Betreff:</b> Re: [Gate-users] VGate</font>
<div> </div>
</div>
<div>
<div dir="ltr">
<h1 style="color:rgb(0,0,0);font-family:"Times New
Roman""><span style="font-weight:normal"><font
size="4">Dear Gate-users,</font></span></h1>
<div>Does anyone happen to know the workaround the
problem as PAT reported back in August, 2018? Thanks
very much.</div>
<h1 style="color:rgb(0,0,0);font-family:"Times New
Roman""><span style="font-weight:normal"><font
size="4">Howard</font></span></h1>
<h1 style="color:rgb(0,0,0);font-family:"Times New
Roman"">[Gate-users] VGate</h1>
<b style="color:rgb(0,0,0);font-family:"Times New
Roman";font-size:medium">P. T.</b><span
style="color:rgb(0,0,0);font-family:"Times New
Roman";font-size:medium"> </span><a
href="mailto:gate-users%40lists.opengatecollaboration.org?Subject=Re%3A%20%5BGate-users%5D%20VGate&In-Reply-To=%3CCAJ9ZRTLFukiRprD_UOQAjEcxVo_POgumWpUGzTA%3DrxDU1eBkMg%40mail.gmail.com%3E"
title="[Gate-users] VGate"
style="font-family:"Times New
Roman";font-size:medium" target="_blank"
moz-do-not-send="true">ptpphysics at gmail.com </a><br
style="color:rgb(0,0,0);font-family:"Times New
Roman";font-size:medium">
<i style="color:rgb(0,0,0);font-family:"Times New
Roman";font-size:medium">Sat Aug 25 12:14:02 CEST
2018</i><span
style="color:rgb(0,0,0);font-family:"Times New
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<hr style="color:rgb(0,0,0);font-family:"Times New
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<pre style="white-space:pre-wrap;color:rgb(0,0,0)">Dear Gate expert,
Shared folder not working in new vgate. Furthermore, Example related
to Voxelized Phantom _Source don't execute correctly and show error:
GateSourceVoxelInterfileReader.cc (l.25):
GateSourceVoxelInterfileReader is obsolete, use
GateSourceVoxelImageReader instead!
Regards,
PAT</pre>
</div>
</div>
</div>
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<pre class="moz-signature" cols="72">--
Thibaut MERLIN -- PhD
Docteur en Imagerie Médicale au Laboratoire de Traitement de l'Information Medicale (LaTIM - INSERM UMR 1101)
Institut Brestois de recherche en Bio-Santé (IBRBS)
12 Avenue Foch, 29200 Brest, FRANCE
Tel: 06.75.12.24.90</pre>
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