[Gate-users] VGate

[Howard]

Hi Thibaut,

The replacement of those lines, ie, replacing interfile with image and
interfileReader with imageReader, did the trick. It is working now. Thanks!

Howard

On Mon, Aug 12, 2019 at 2:28 PM tmerlin <Thibaut.Merlin at univ-brest.fr>
wrote:

> Hi Howard,
>
> In the macros/VoxelizedSource.mac file, try to replace the following lines:
>
> */gate/source/voxel_brain/reader/insert interfile*
> */gate/source/voxel_brain/interfileReader/translator/insert range*
> */gate/source/voxel_brain/interfileReader/rangeTranslator/readTable
> ./phantom/activity_range.dat*
> */gate/source/voxel_brain/interfileReader/rangeTranslator/describe 1*
> */gate/source/voxel_brain/interfileReader/readFile
> ./phantom/brain_phantom.h33*
>
> by:
>
> */gate/source/voxel_brain/reader/insert image*
> */gate/source/voxel_brain/imageReader/translator/insert range*
> */gate/source/voxel_brain/imageReader/rangeTranslator/readTable
> ./phantom/activity_range.dat*
> */gate/source/voxel_brain/imageReader/rangeTranslator/describe 1*
> */gate/source/voxel_brain/imageReader/readFile ./phantom/brain_phantom.h33*
>
> Hope this works for you
>
>
> Cheers,
>
> Thibaut Merlin
>
>
> On 12/08/2019 19:52, Howard wrote:
>
> Hi David,
>
> Thank you for taking the time to reply to my question. I am using Gate
> v8.2 and was trying to run the example provided in the following training
> session:
>
>
> http://www.opengatecollaboration.org/Materials2015/PracticalExercises2015/VoxelizedSources&Phantoms
>
>
> The error was similar to the one reported by PAT back in August 2018:
>
> GateSourceVoxelInterfileReader.cc (l.25): GateSourceVoxelInterfileReader
> is obsolete, use GateSourceVoxelImageReader instead!
>
> I wonder whether there is a workaround to this error. Many thanks!
>
> Howard
>
>
>
> On Mon, Aug 12, 2019 at 4:51 AM David Boersma <david.boersma at acmit.at>
> wrote:
>
>> Hi Howard and PAT,
>>
>>
>> Which version of VGate are you using? Could you try the latest release
>> (8.2, released in February)?
>>
>>
>> And are you referring to the "shared disk" issue or the  "interfile"
>> issue?
>>
>>
>> If the latter: I searched the current version of GateContrib and I do not
>> find any references to "GateSourceVoxelInterfileReader". It's possible
>> that this has been fixed in the meantime. So then the solution would be to
>> run "git pull" in your GateContrib clone and check what happened to the
>> example that you are referring to (I'm not sure which example that is).
>> It's possible that this particular example has actually been removed in the
>> meantime.
>>
>>
>> I hope that this helps a bit. If it doesn't, then I hope that an imaging
>> expert (which I am not) will come back from vacation soon and give a better
>> answer your question. 😊
>>
>>
>> Good luck,
>>
>> David Boersma
>> ------------------------------
>> *Von:* Gate-users <gate-users-bounces at lists.opengatecollaboration.org>
>> im Auftrag von Howard <lomahu at gmail.com>
>> *Gesendet:* Freitag, 9. August 2019 22:50:10
>> *An:* gate-users at lists.opengatecollaboration.org
>> *Betreff:* Re: [Gate-users] VGate
>>
>> Dear Gate-users,
>> Does anyone happen to know the workaround the problem as PAT reported
>> back in August, 2018? Thanks very much.
>> Howard [Gate-users] VGate *P. T.* ptpphysics at gmail.com
>> <gate-users%40lists.opengatecollaboration.org?Subject=Re%3A%20%5BGate-users%5D%20VGate&In-Reply-To=%3CCAJ9ZRTLFukiRprD_UOQAjEcxVo_POgumWpUGzTA%3DrxDU1eBkMg%40mail.gmail.com%3E>
>> *Sat Aug 25 12:14:02 CEST 2018*
>>
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>>
>> ------------------------------
>>
>> Dear Gate expert,
>>
>> Shared folder not working in new vgate. Furthermore, Example related
>> to Voxelized Phantom _Source don't execute correctly and show error:
>>
>> GateSourceVoxelInterfileReader.cc (l.25):
>> GateSourceVoxelInterfileReader is obsolete, use
>> GateSourceVoxelImageReader instead!
>>
>> Regards,
>> PAT
>>
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>
>
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>
> --
> Thibaut MERLIN -- PhD
>
> Docteur en Imagerie Médicale au Laboratoire de Traitement de l'Information Medicale (LaTIM - INSERM UMR 1101)
> Institut Brestois de recherche en Bio-Santé (IBRBS)
> 12 Avenue Foch, 29200 Brest, FRANCE
> Tel: 06.75.12.24.90
>
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