[Gate-users] Optical imaging simulation with a lens using GATEv6.2 (macro files attached)

[Pietrzyk, Uwe]

Dear Han Gyu Kang,

many thanks for sharing your impressive and very well documented developments
with GATE to the Gate - Community.
We will have a closer look into your results and maybe we find support to adapt
your macros and analysis to recent versions of GATE and/or ROOT.

Many thanks again and kind regards,

Uwe Pietrzyk

/----------------------------------------------------------------------
Prof. Dr. Uwe Pietrzyk
Diplom-Physiker
Institut für Neurowissenschaften und Medizin / INM-4
Forschungszentrum Jülich GmbH
52425 Jülich
Tel: +49-2461-61 4763
Fax: +49-2461-61 2820
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eMail: U.Pietrzyk at fz-juelich.de
http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html
&
Bergische Universität Wuppertal
Fakultät für Mathematik und Naturwissenschaften
Büro:  D.08.01
Gaußstr. 20
42097 Wuppertal
Tel: +49-(0)202-439-3523
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http://www.medizinphysik.uni-wuppertal.de
----------------------------------------------------------------------/

> On 21. Mar 2018, at 14:46, han gyoo Kang <hangyookang at gmail.com> wrote:
> 
> Dear GATE users,
> 
> I would like to share my GATEv6.2 macro files for optical imaging simulation.
> 
> I have implemented a lens on GATEv6.2 optical simulation.
> 
> You can run two different optical imaging simulations.
> ========================================
> 1) Bioluminescence (BLI) 
> 2) NIR Fluorescence (FLI)
> ========================================
> 
> Below is some examples of optical imaging simulation of a USAF 1951 negative resolution target.
> <image.png>
> <image.png>
> 
> In case of near-infrared (NIR) fluorescence imaging simulation, an indocyanine green (ICG) fluorophore was used.
> 
> <image.png>
> <image.png>
> 
> 
> You can find more detailed information about the GATE simulation results on the following paper and URL, respectively
> 
> -Lens implementation on the GATE Monte Carlo toolkit for optical imaging simulation (2018, Journal of Biomedical Optics)
> 
> -http://www.opengatecollaboration.org/Meetings <http://www.opengatecollaboration.org/Meetings> (2018 IEEE NSS/MIC GATE Users Meeting, Atlanta, USA)
> 
> 
> Please note that the attached macro file (tar.gz) should be extracted on Linux. 
> 
> If you try to extract (or unzip) the macro file (tar.gz) on Window, there might be some errors due to the long file name included in the macro file.
> 
> The main macro filename starts with "Main". 
> Once you run the main macro file, you can analyze the ROOT output file with an include analysis file
> =============================================================================
> 1) ana_Optical_BLI_USAF.cc (Bioluminescence imaging)
> 2) ana_Optical_FLI.cc (Fluorescence imaging)
> =============================================================================
> 
> 
> I would like to give special thanks to Dr. Vesna Cuplov (vesna.cuplov at gmail.com <mailto:vesna.cuplov at gmail.com>) and Dr. Emiie Roncali (eroncali at ucdavis.edu <mailto:eroncali at ucdavis.edu> ) for their valuable comments in the past IEEE MIC
> 
> I would be happy to get any question regarding the GATE optical imaging simulation through the GATE mailing list.
> 
> 
> Best regards,
> 
> Han Gyu Kang, PhD.
> 
> Eulji University, South Korea.
> <BLI_Lens_USAF_1951_target_source_GATEv6p2_2018_03_11_Eulji_Univ_KangHG_v0.tar.gz><BLI_Lens_Cylinder_Sources_GATEv6p2_2018_03_12_Eulji_Univ_KangHG_v0.tar.gz><NIR_Lens_ICG_Fluorescence_Sphere_Phantom_Ascending_GATEv6p2_KangHG_2018_03_11_Eulji_Univ_KangHG_v0.tar.gz><Lens implementation on the GATE Monte Carlo toolkit for optical imaging simulation(2018_JBO).pdf>

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