<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">Dear Han Gyu Kang,</div><div class=""><br class=""></div><div class="">many thanks for sharing your impressive and very well documented developments</div><div class="">with GATE to the Gate - Community.</div><div class="">We will have a closer look into your results and maybe we find support to adapt</div><div class="">your macros and analysis to recent versions of GATE and/or ROOT.</div><div class=""><br class=""></div><div class="">Many thanks again and kind regards,</div><div class=""><br class=""></div><div class="">Uwe Pietrzyk</div><br class=""><div class="">
<div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">/----------------------------------------------------------------------<br class="">Prof. Dr. Uwe Pietrzyk<br class="">Diplom-Physiker<br class="">Institut für Neurowissenschaften und Medizin / INM-4<br class="">Forschungszentrum Jülich GmbH<br class="">52425 Jülich<br class="">Tel: +49-2461-61 4763<br class="">Fax: +49-2461-61 2820<br class="">Mobil: +49-162-103-4871<br class="">eMail: <a href="mailto:U.Pietrzyk@fz-juelich.de" class="">U.Pietrzyk@fz-juelich.de</a><br class=""><a href="http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html" class="">http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html</a><br class="">&<br class="">Bergische Universität Wuppertal<br class="">Fakultät für Mathematik und Naturwissenschaften<br class="">Büro: D.08.01<br class="">Gaußstr. 20<br class="">42097 Wuppertal<br class="">Tel: +49-(0)202-439-3523<br class="">Fax: +49-(0)202-439-2811<br class="">eMail: Uwe.Pietrzyk@uni-wuppertal.de<br class="">http://www.medizinphysik.uni-wuppertal.de<br class="">----------------------------------------------------------------------/</div>
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<br class=""><div><blockquote type="cite" class=""><div class="">On 21. Mar 2018, at 14:46, han gyoo Kang <<a href="mailto:hangyookang@gmail.com" class="">hangyookang@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html; charset=utf-8" class=""><div dir="ltr" class="">Dear GATE users,<div class=""><br class=""></div><div class="">I would like to share my GATEv6.2 macro files for optical imaging simulation.</div><div class=""><br class=""></div><div class="">I have implemented a <b class=""><font color="#0000ff" class="">lens </font></b>on GATEv6.2 optical simulation.</div><div class=""><br class=""></div><div class="">You can run two different optical imaging simulations.</div><div class="">==============================<wbr class="">==========</div><div class="">1) <b class="">Bioluminescence (BLI) </b></div><div class="">2) <b class="">NIR Fluorescence (FLI)</b></div><div class=""><b class=""><div style="font-weight:400;display:inline!important" class="">==============================<wbr class="">==========</div></b><br class=""></div><div class=""><br class=""></div><div class="">Below is some examples of optical imaging simulation of a USAF 1951 negative resolution target.</div><div class=""><span id="cid:ii_jf11fs1o3_162487052f54a186"><image.png></span></div><div class=""><span id="cid:ii_jf11gabp4_1624870a8c42da86"><image.png></span></div><div class=""><br class=""></div><div class="">In case of near-infrared (NIR) fluorescence imaging simulation, an indocyanine green (ICG) fluorophore was used.</div><div class=""><br class=""><span id="cid:ii_jf1524e46_16248cd1617bdf3d"><image.png></span></div><div class=""><span id="cid:ii_jf1536oe7_16248cdd9cf8e5bc"><image.png></span><br class=""><br class=""><br class=""></div><div class="">You can find more detailed information about the GATE simulation results on the following paper and URL, respectively</div><div class=""><br class=""></div><div class="">-<font color="#0000ff" class=""><b class="">Lens implementation on the GATE Monte Carlo toolkit for optical imaging simulation</b> (</font>2018, Journal of Biomedical Optics)<br class=""></div><div class=""><br class=""></div><div class="">-<font color="#0000ff" class=""><b class=""><a href="http://www.opengatecollaboration.org/Meetings" target="_blank" class="">http://www.opengatecollaborat<wbr class="">ion.org/Meetings</a></b> </font>(2018 IEEE NSS/MIC GATE Users Meeting, Atlanta, USA)</div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">Please note that the attached macro file (tar.gz) should be extracted on <b class=""><font color="#0000ff" class="">Linux</font></b>. </div><div class=""><br class=""></div><div class="">If you try to extract (or unzip) the macro file (tar.gz) on Window, there might be some errors due to the long file name included in the macro file.</div><div class=""><br class=""></div><div class="">The main macro filename starts with "<b class=""><font color="#0000ff" class="">Main</font></b>". </div><div class="">Once you run the main macro file, you can analyze the ROOT output file with an include analysis file</div><div class="">==============================<wbr class="">==============================<wbr class="">=================</div><div class="">1) ana_Optical_BLI_USAF.cc (Bioluminescence imaging)</div><div class="">2) ana_Optical_FLI.cc (Fluorescence imaging)</div><div class="">
<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration-style:initial;text-decoration-color:initial" class="">==============================<wbr class="">==============================<wbr class="">=================<br class=""></div></div><div class=""><br class="m_5739806941327984871m_2577055189591304885gmail-Apple-interchange-newline">
<br class=""></div><div class="">
<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration-style:initial;text-decoration-color:initial" class="">I would like to give special thanks to Dr. Vesna Cuplov (<a href="mailto:vesna.cuplov@gmail.com" target="_blank" class="">vesna.cuplov@gmail.com</a>) and Dr. Emiie Roncali (<span style="font-family: arial, sans-serif; font-size: 14px; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; background-color: rgb(255, 255, 255); float: none; display: inline;" class=""><a href="mailto:eroncali@ucdavis.edu" target="_blank" class="">eroncali@ucdavis.edu</a></span><span class=""> </span>) for their valuable comments in the past IEEE MIC</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration-style:initial;text-decoration-color:initial" class=""><br class=""></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration-style:initial;text-decoration-color:initial" class="">I would be happy to get any question regarding the GATE optical imaging simulation through the GATE mailing list.</div></div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">Best regards,</div><div class=""><br class=""></div><div class="">Han Gyu Kang, PhD.</div><div class=""><br class=""></div><div class="">Eulji University, South Korea.</div></div>
<span id="cid:BD8090CE-07A4-4357-A867-4914BDCED3B8@ime.kfa-juelich.de."><BLI_Lens_USAF_1951_target_source_GATEv6p2_2018_03_11_Eulji_Univ_KangHG_v0.tar.gz></span><span id="cid:CFBAE3E8-3CA8-4E2F-BCFC-22D93DBFBCF0@ime.kfa-juelich.de."><BLI_Lens_Cylinder_Sources_GATEv6p2_2018_03_12_Eulji_Univ_KangHG_v0.tar.gz></span><span id="cid:1EA23F0F-6906-4932-9DFD-C510CDBCC5FE@ime.kfa-juelich.de."><NIR_Lens_ICG_Fluorescence_Sphere_Phantom_Ascending_GATEv6p2_KangHG_2018_03_11_Eulji_Univ_KangHG_v0.tar.gz></span><span id="cid:4B0C7D77-DB07-442B-838B-FD4CFC397E23@ime.kfa-juelich.de."><Lens implementation on the GATE Monte Carlo toolkit for optical imaging simulation(2018_JBO).pdf></span></div></blockquote></div><br class=""></body></html>