[Gate-users] Gate-users Digest, Vol 113, Issue 8
Vincent Ma
carnby2000 at gmail.com
Fri Oct 9 19:58:50 CEST 2015
Dear all,
I have installed vGate 2.1 in order to do some simulation for the SPECT
scanner in my hospital and have a question on the collimator. I was
wondering how to define the general purpose medium energy(ME) collimator in
gate? Are there any examples I can follow?
Thanks
Vincent
2015年10月9日 下午11:26 於 <gate-users-request at lists.opengatecollaboration.org>
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> Today's Topics:
>
> 1. Installation of Gate 7.1 - error during linking (Pawe? Kowalski)
> 2. Re: Installation of Gate 7.1 - error during linking
> (Pawe? Kowalski)
> 3. batch mode and aliases doesn't work for more than one
> parameter - Bug? (Anders Garpebring)
> 4. Re: batch mode and aliases doesn't work for more than one
> parameter - Bug? (David Sarrut)
> 5. Gate sometimes waits for nothing, why? (Anders Garpebring)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 9 Oct 2015 14:55:07 +0200
> From: Pawe? Kowalski <flukson at gmail.com>
> To: gate-users <gate-users at lists.opengatecollaboration.org>
> Subject: [Gate-users] Installation of Gate 7.1 - error during linking
> Message-ID:
> <
> CANzsbvL+6UK12si_NGGX4AzLE-RiTf_3hKFz35qXJxO-PzY6NQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hello,
>
> I would like to install Gate v 7.1. Version of Root is
>
> During installation of Gate I only set two variables: INSTALL_PREFIX and I
> switch on optical photons.
>
> After compilation of Gate, I get error during linking (there are also some
> warnings during compilation):
>
> /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
> undefined reference to
> `std::__detail::_List_node_base::_M_unhook()@GLIBCXX_3.4.15'
> /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
> undefined reference to
> `std::__detail::_List_node_base::swap(std::__detail::_List_node_base&,
> std::__detail::_List_node_base&)@GLIBCXX_3.4.15'
> /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
> undefined reference to
>
> `std::__detail::_List_node_base::_M_transfer(std::__detail::_List_node_base*,
> std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
> /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
> undefined reference to
>
> `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
> collect2: ld returned 1 exit status
> make[2]: *** [Gate] Error 1
> make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
> make: *** [all] Error 2
>
> Did anyone have similar problem? What may be the solution?
>
> Best regards,
> Pawe? Kowalski
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> ------------------------------
>
> Message: 2
> Date: Fri, 9 Oct 2015 15:06:22 +0200
> From: Pawe? Kowalski <flukson at gmail.com>
> To: gate-users <gate-users at lists.opengatecollaboration.org>
> Subject: Re: [Gate-users] Installation of Gate 7.1 - error during
> linking
> Message-ID:
> <CANzsbvJMX=CO0eE+8+TUxzqyc_6NyXb=
> 8Ywap-D9BFyhvtYoyw at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Sorry for SPAM. In previous message I have forgotten to add versions of
> Root and Geant4:
>
> Root - 5.34-x86_64-gcc46-python27
> Geant4 - 4.10.01.p02-gcc46
>
> Best regards,
> PK
>
> 2015-10-09 14:55 GMT+02:00 Pawe? Kowalski <flukson at gmail.com>:
>
> > Hello,
> >
> > I would like to install Gate v 7.1. Version of Root is
> >
> > During installation of Gate I only set two variables: INSTALL_PREFIX and
> I
> > switch on optical photons.
> >
> > After compilation of Gate, I get error during linking (there are also
> some
> > warnings during compilation):
> >
> > /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
> > undefined reference to
> > `std::__detail::_List_node_base::_M_unhook()@GLIBCXX_3.4.15'
> > /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
> > undefined reference to
> > `std::__detail::_List_node_base::swap(std::__detail::_List_node_base&,
> > std::__detail::_List_node_base&)@GLIBCXX_3.4.15'
> > /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
> > undefined reference to
> >
> `std::__detail::_List_node_base::_M_transfer(std::__detail::_List_node_base*,
> > std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
> > /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so:
> > undefined reference to
> >
> `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
> > collect2: ld returned 1 exit status
> > make[2]: *** [Gate] Error 1
> > make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
> > make: *** [all] Error 2
> >
> > Did anyone have similar problem? What may be the solution?
> >
> > Best regards,
> > Pawe? Kowalski
> >
> >
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>
> ------------------------------
>
> Message: 3
> Date: Fri, 9 Oct 2015 14:23:50 +0000
> From: Anders Garpebring <anders.garpebring at umu.se>
> To: "gate-users at lists.opengatecollaboration.org"
> <gate-users at lists.opengatecollaboration.org>
> Subject: [Gate-users] batch mode and aliases doesn't work for more
> than one parameter - Bug?
> Message-ID: <b0b3c1c97d204c0a800ca52ab9e04034 at UMU-EX05.ad.umu.se>
> Content-Type: text/plain; charset="us-ascii"
>
> Dear gate users,
>
> I try to call a macro with several alias parameters and I follow the
> syntax in the manual. So my call to gate is:
>
> Gate -a [physics,empenelope] [nSim,20] main.mac
>
> This works if I only use a single parameter. But as soon as I add more
> (like in the example above) I just get the alias is not defined. Have the
> syntax changed but not the manual or is it a bug?
>
> Best,
> Anders
> -------------- next part --------------
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>
> ------------------------------
>
> Message: 4
> Date: Fri, 9 Oct 2015 16:35:51 +0200
> From: David Sarrut <David.Sarrut at creatis.insa-lyon.fr>
> To: Anders Garpebring <anders.garpebring at umu.se>
> Cc: "gate-users at lists.opengatecollaboration.org"
> <gate-users at lists.opengatecollaboration.org>
> Subject: Re: [Gate-users] batch mode and aliases doesn't work for more
> than one parameter - Bug?
> Message-ID:
> <
> CAKTJC4DTvecOpL6jhHyb6Pf41CA9YhQS_T17eYc-PzpfukpryQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> bug in the manual : Gate main.mac -a '[physics,empenelope] [nSim,20]'
>
> David
>
> On Fri, Oct 9, 2015 at 4:23 PM, Anders Garpebring <
> anders.garpebring at umu.se>
> wrote:
>
> > Dear gate users,
> >
> >
> >
> > I try to call a macro with several alias parameters and I follow the
> > syntax in the manual. So my call to gate is:
> >
> >
> >
> > Gate -a [physics,empenelope] [nSim,20] main.mac
> >
> >
> >
> > This works if I only use a single parameter. But as soon as I add more
> > (like in the example above) I just get the alias is not defined. Have the
> > syntax changed but not the manual or is it a bug?
> >
> >
> >
> > Best,
> >
> > Anders
> >
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> >
>
>
>
> --
> David Sarrut, Phd
> Directeur de recherche CNRS
> CREATIS, UMR CNRS 5220, Inserm U 1044
> Centre de lutte contre le cancer L?on B?rard
> 28 rue La?nnec, 69373 Lyon cedex 08
> Tel : 04 78 78 51 51 / 06 74 72 05 42
> http://www.creatis.insa-lyon.fr/~dsarrut
> _________________________________
> "2 + 2 = 5, for extremely large values of 2"
> _________________________________
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> ------------------------------
>
> Message: 5
> Date: Fri, 9 Oct 2015 15:22:27 +0000
> From: Anders Garpebring <anders.garpebring at umu.se>
> To: "gate-users at lists.opengatecollaboration.org"
> <gate-users at lists.opengatecollaboration.org>
> Subject: [Gate-users] Gate sometimes waits for nothing, why?
> Message-ID: <e8187dcba70e4a76b79b3f2a50934d97 at UMU-EX05.ad.umu.se>
> Content-Type: text/plain; charset="us-ascii"
>
> Dear gate users,
>
> Im working on running a batch of Gate simulations. To test my macro I want
> to run through all 28 simulation with just a single event for each
> simulation. However, the simulation often get stuck seemingly doing nothing
> for maybe 30 s. Why is this? Typically when I run just a single execution
> of my script it just takes a second or two. If I run it again immediately
> after it can take 30 seconds to finish.
>
> I get no errors but some warnings about the viewer (which I try to switch
> off).
>
> WARNING: Scene "none" not found.
> /vis/scene/list to see scenes.
>
> WARNING: command "/vis/viewer/update" could not be applied: no current
> viewer
>
> In my code there are no references to the visualization.
>
> Best,
> Anders
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> ------------------------------
>
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> End of Gate-users Digest, Vol 113, Issue 8
> ******************************************
>
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