Dear all, I have installed vGate 2.1 in order to do some simulation for the SPECT scanner in my hospital and have a question on the collimator. I was wondering how to define the general purpose medium energy(ME) collimator in gate? Are there any examples I can follow? Thanks Vincent <div class="gmail_quote">2015年10月9日下午11:26 於 <<a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a>> 寫道： <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send Gate-users mailing list submissions to <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a> To subscribe or unsubscribe via the World Wide Web, visit <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> or, via email, send a message with subject or body 'help' to <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a> You can reach the person managing the list at <a href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a> When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..." Today's Topics: 1. Installation of Gate 7.1 - error during linking (Pawe? Kowalski) 2. Re: Installation of Gate 7.1 - error during linking (Pawe? Kowalski) 3. batch mode and aliases doesn't work for more than one parameter - Bug? (Anders Garpebring) 4. Re: batch mode and aliases doesn't work for more than one parameter - Bug? (David Sarrut) 5. Gate sometimes waits for nothing, why? (Anders Garpebring) ---------------------------------------------------------------------- Message: 1 Date: Fri, 9 Oct 2015 14:55:07 +0200 From: Pawe? Kowalski <<a href="mailto:flukson@gmail.com">flukson@gmail.com</a>> To: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: [Gate-users] Installation of Gate 7.1 - error during linking Message-ID: <<a href="mailto:CANzsbvL%2B6UK12si_NGGX4AzLE-RiTf_3hKFz35qXJxO-PzY6NQ@mail.gmail.com">CANzsbvL+6UK12si_NGGX4AzLE-RiTf_3hKFz35qXJxO-PzY6NQ@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Hello, I would like to install Gate v 7.1. Version of Root is During installation of Gate I only set two variables: INSTALL_PREFIX and I switch on optical photons. After compilation of Gate, I get error during linking (there are also some warnings during compilation): /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so: undefined reference to `std::__detail::_List_node_base::_M_unhook()@GLIBCXX_3.4.15' /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so: undefined reference to `std::__detail::_List_node_base::swap(std::__detail::_List_node_base&, std::__detail::_List_node_base&)@GLIBCXX_3.4.15' /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so: undefined reference to `std::__detail::_List_node_base::_M_transfer(std::__detail::_List_node_base*, std::__detail::_List_node_base*)@GLIBCXX_3.4.15' /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so: undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)@GLIBCXX_3.4.15' collect2: ld returned 1 exit status make[2]: *** [Gate] Error 1 make[1]: *** [CMakeFiles/Gate.dir/all] Error 2 make: *** [all] Error 2 Did anyone have similar problem? What may be the solution? Best regards, Pawe? Kowalski -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151009/fb537622/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151009/fb537622/attachment-0001.html</a>> ------------------------------ Message: 2 Date: Fri, 9 Oct 2015 15:06:22 +0200 From: Pawe? Kowalski <<a href="mailto:flukson@gmail.com">flukson@gmail.com</a>> To: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] Installation of Gate 7.1 - error during linking Message-ID: <CANzsbvJMX=CO0eE+8+TUxzqyc_6NyXb=<a href="mailto:8Ywap-D9BFyhvtYoyw@mail.gmail.com">8Ywap-D9BFyhvtYoyw@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Sorry for SPAM. In previous message I have forgotten to add versions of Root and Geant4: Root - 5.34-x86_64-gcc46-python27 Geant4 - 4.10.01.p02-gcc46 Best regards, PK 2015-10-09 14:55 GMT+02:00 Pawe? Kowalski <<a href="mailto:flukson@gmail.com">flukson@gmail.com</a>>: > Hello, > > I would like to install Gate v 7.1. Version of Root is > > During installation of Gate I only set two variables: INSTALL_PREFIX and I > switch on optical photons. > > After compilation of Gate, I get error during linking (there are also some > warnings during compilation): > > /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so: > undefined reference to > `std::__detail::_List_node_base::_M_unhook()@GLIBCXX_3.4.15' > /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so: > undefined reference to > `std::__detail::_List_node_base::swap(std::__detail::_List_node_base&, > std::__detail::_List_node_base&)@GLIBCXX_3.4.15' > /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so: > undefined reference to > `std::__detail::_List_node_base::_M_transfer(std::__detail::_List_node_base*, > std::__detail::_List_node_base*)@GLIBCXX_3.4.15' > /mnt/opt/apps/slc6/root/5.34-x86_64-gcc46-python27.cis2/lib/libCore.so: > undefined reference to > `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)@GLIBCXX_3.4.15' > collect2: ld returned 1 exit status > make[2]: *** [Gate] Error 1 > make[1]: *** [CMakeFiles/Gate.dir/all] Error 2 > make: *** [all] Error 2 > > Did anyone have similar problem? What may be the solution? > > Best regards, > Pawe? Kowalski > > -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151009/e35ca167/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151009/e35ca167/attachment-0001.html</a>> ------------------------------ Message: 3 Date: Fri, 9 Oct 2015 14:23:50 +0000 From: Anders Garpebring <<a href="mailto:anders.garpebring@umu.se">anders.garpebring@umu.se</a>> To: "<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>" <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: [Gate-users] batch mode and aliases doesn't work for more than one parameter - Bug? Message-ID: <<a href="mailto:b0b3c1c97d204c0a800ca52ab9e04034@UMU-EX05.ad.umu.se">b0b3c1c97d204c0a800ca52ab9e04034@UMU-EX05.ad.umu.se</a>> Content-Type: text/plain; charset="us-ascii" Dear gate users, I try to call a macro with several alias parameters and I follow the syntax in the manual. So my call to gate is: Gate -a [physics,empenelope] [nSim,20] main.mac This works if I only use a single parameter. But as soon as I add more (like in the example above) I just get the alias is not defined. Have the syntax changed but not the manual or is it a bug? Best, Anders -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151009/1769083e/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151009/1769083e/attachment-0001.html</a>> ------------------------------ Message: 4 Date: Fri, 9 Oct 2015 16:35:51 +0200 From: David Sarrut <<a href="mailto:David.Sarrut@creatis.insa-lyon.fr">David.Sarrut@creatis.insa-lyon.fr</a>> To: Anders Garpebring <<a href="mailto:anders.garpebring@umu.se">anders.garpebring@umu.se</a>> Cc: "<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>" <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] batch mode and aliases doesn't work for more than one parameter - Bug? Message-ID: <<a href="mailto:CAKTJC4DTvecOpL6jhHyb6Pf41CA9YhQS_T17eYc-PzpfukpryQ@mail.gmail.com">CAKTJC4DTvecOpL6jhHyb6Pf41CA9YhQS_T17eYc-PzpfukpryQ@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" bug in the manual : Gate main.mac -a '[physics,empenelope] [nSim,20]' David On Fri, Oct 9, 2015 at 4:23 PM, Anders Garpebring <<a href="mailto:anders.garpebring@umu.se">anders.garpebring@umu.se</a>> wrote: > Dear gate users, > > > > I try to call a macro with several alias parameters and I follow the > syntax in the manual. So my call to gate is: > > > > Gate -a [physics,empenelope] [nSim,20] main.mac > > > > This works if I only use a single parameter. But as soon as I add more > (like in the example above) I just get the alias is not defined. Have the > syntax changed but not the manual or is it a bug? > > > > Best, > > Anders > > _______________________________________________ > Gate-users mailing list > <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> > -- David Sarrut, Phd Directeur de recherche CNRS CREATIS, UMR CNRS 5220, Inserm U 1044 Centre de lutte contre le cancer L?on B?rard 28 rue La?nnec, 69373 Lyon cedex 08 Tel : 04 78 78 51 51 / 06 74 72 05 42 <a href="http://www.creatis.insa-lyon.fr/~dsarrut" rel="noreferrer" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a> _________________________________ "2 + 2 = 5, for extremely large values of 2" _________________________________ -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151009/1323e44e/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151009/1323e44e/attachment-0001.html</a>> ------------------------------ Message: 5 Date: Fri, 9 Oct 2015 15:22:27 +0000 From: Anders Garpebring <<a href="mailto:anders.garpebring@umu.se">anders.garpebring@umu.se</a>> To: "<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>" <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: [Gate-users] Gate sometimes waits for nothing, why? Message-ID: <<a href="mailto:e8187dcba70e4a76b79b3f2a50934d97@UMU-EX05.ad.umu.se">e8187dcba70e4a76b79b3f2a50934d97@UMU-EX05.ad.umu.se</a>> Content-Type: text/plain; charset="us-ascii" Dear gate users, Im working on running a batch of Gate simulations. To test my macro I want to run through all 28 simulation with just a single event for each simulation. However, the simulation often get stuck seemingly doing nothing for maybe 30 s. Why is this? Typically when I run just a single execution of my script it just takes a second or two. If I run it again immediately after it can take 30 seconds to finish. I get no errors but some warnings about the viewer (which I try to switch off). WARNING: Scene "none" not found. /vis/scene/list to see scenes. WARNING: command "/vis/viewer/update" could not be applied: no current viewer In my code there are no references to the visualization. Best, Anders -------------- next part -------------- An HTML attachment was scrubbed... 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