[Gate-users] Exemple RT : crash
David Sarrut
David.Sarrut at creatis.insa-lyon.fr
Wed Mar 18 12:58:09 CET 2015
Hello,
it is now corrected in the "develop" branch (it will be available in the
public repository soon https://github.com/OpenGATE/Gate ).
thanks to the two Simons
David
On Tue, Mar 17, 2015 at 5:55 PM, Simon Rit <simon.rit at creatis.insa-lyon.fr>
wrote:
> Hi Luc,
> The idea is that only the md5 checksum is in the repository and the file
> should be automatically downloaded from midas. Clearly, looking at the file
> examples/CMakeLists.txt, the file is missing which is why it's not been
> downloaded. I'll discuss with David to correct this but in the meantime,
> it's available on Midas:
> http://midas3.kitware.com/midas/community/28
> Simon
>
> On Tue, Mar 17, 2015 at 4:40 PM, Luc SIMON <uhqd75 at gmail.com> wrote:
>
>> Dear Gaters,
>>
>>
>> Sorry for multiple questions but when downloading data used for
>> Example_Radiotherapy, I think a .raw file is missing : patient-4mm.raw
>> (Example3)
>>
>> Again on mac it is not obvious to understand what file in MD5/ is the
>> good .raw used for an example (see list hereafter, as it is displayed using
>> ls command).
>>
>> But using the .md5 information it is possible to compute the size (in
>> bytes).
>>
>>
>> In Example2, patient-2mm is a 126x126x111 image of short (2 bytes) =
>> 3524472 bytes. In this list it is the 8th file. It is possible to create a
>> symbolic link to this file and example2 works very well
>>
>>
>> In Example3, patient-4mm is a 63x93x55 image of short = 436590 bytes. No
>> file has this size in the list.
>>
>> To summarize, can someone send me patient-4mm.raw ? (uhqd75 at gmail.com)
>>
>>
>> Thanks for any help
>>
>>
>> -rw-r--r-- 1 lucsimon admin 4194304 16 mar 13:39
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>> 2015-03-16 8:33 GMT+01:00 David Sarrut <David.Sarrut at creatis.insa-lyon.fr
>> >:
>>
>>> Hello Luc,
>>>
>>> did the file patient-2mm.raw exists ? An image is stored with 2 files :
>>> A.mhd (the header) and A.raw (the pixel data).
>>>
>>> If not, in cmake, set GATE_DOWNLOAD_EXAMPLES_DATA to ON to download the
>>> data
>>>
>>> welcome back to Gate ;)
>>> David
>>>
>>> On Thu, Mar 12, 2015 at 10:46 PM, Luc SIMON <uhqd75 at gmail.com> wrote:
>>>
>>>> Dear Gaters
>>>>
>>>> It is a real pleasure to me to come back here after a 12 years break. I
>>>> worked previously in Lausanne at the very beginning of Gate v1...
>>>> I am going to use Gate again for new purposes, in particular in RT.
>>>> Well... a lot to learn with all these new features.
>>>> I start with a newbee question, but if someone can help...
>>>>
>>>> I installed GATE V7 on a mac book Yosemite 10.10.2
>>>> my configuration is at the end of this email, hereafter.
>>>>
>>>> Well It half works.
>>>> I execute some exemples of Geant4 and GATE with success
>>>> (PETcylindrilcal is ok with visualization !!)
>>>> But I try to execute Radiotherapy examples and it doesn't work.
>>>>
>>>> I tried example_Radiotherapy/example2/mac/main-NPV1.mac
>>>>
>>>> and it doesnt work.
>>>> The following command :
>>>>
>>>> Idle> /control/execute mac/start.mac
>>>>
>>>> gives :
>>>>
>>>> [Core-0] Initialization of geometry
>>>>
>>>> MetaImage: Read: Cannot open data file
>>>>
>>>> GateMHDImage.cc (l.185): MHD File cannot be read: data/patient-2mm.mhd
>>>>
>>>>
>>>> I checked the rwx rights of the file patient-2mm.mhd
>>>>
>>>> and it is ok (rwxrwxrwx)
>>>>
>>>>
>>>> Can someone has the same problem ?
>>>>
>>>> I must add that I changed
>>>>
>>>> #/vis/open OGLIQt
>>>> to
>>>>
>>>> /vis/open OGLSX
>>>>
>>>> because it didn't work with OGLIQt
>>>>
>>>> Thank you
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> config :
>>>>
>>>> CMAKE 3.1.3
>>>>
>>>> xcode 6.1.1
>>>>
>>>> xquartz 2.7.7
>>>>
>>>> cmake 2.8.12.2
>>>>
>>>> CLHEP 2.1.3.1
>>>>
>>>> root v5.34.26
>>>>
>>>> GEANT4.9.6p04
>>>>
>>>> GATE v7.0
>>>>
>>>> --
>>>> ___________________
>>>>
>>>> SIMON Luc, PhD
>>>> 28, rue Pierre Barthes
>>>> 31500 Toulouse
>>>>
>>>> _______________________________________________
>>>> Gate-users mailing list
>>>> Gate-users at lists.opengatecollaboration.org
>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>>>
>>>
>>>
>>>
>>> --
>>> David Sarrut, Phd
>>> Directeur de recherche CNRS
>>> CREATIS, UMR CNRS 5220, Inserm U 1044
>>> Centre de lutte contre le cancer Léon Bérard
>>> 28 rue Laënnec, 69373 Lyon cedex 08
>>> Tel : 04 78 78 51 51 / 06 74 72 05 42
>>> http://www.creatis.insa-lyon.fr/~dsarrut
>>> _________________________________
>>> "2 + 2 = 5, for extremely large values of 2"
>>> _________________________________
>>>
>>
>>
>>
>> --
>> ___________________
>>
>> SIMON Luc, PhD
>> IUCT-Oncopole / CRCT Team 15
>>
>>
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
--
David Sarrut, Phd
Directeur de recherche CNRS
CREATIS, UMR CNRS 5220, Inserm U 1044
Centre de lutte contre le cancer Léon Bérard
28 rue Laënnec, 69373 Lyon cedex 08
Tel : 04 78 78 51 51 / 06 74 72 05 42
http://www.creatis.insa-lyon.fr/~dsarrut
_________________________________
"2 + 2 = 5, for extremely large values of 2"
_________________________________
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