[Gate-users] Exemple RT : crash
Simon Rit
simon.rit at creatis.insa-lyon.fr
Tue Mar 17 17:55:14 CET 2015
Hi Luc,
The idea is that only the md5 checksum is in the repository and the file
should be automatically downloaded from midas. Clearly, looking at the file
examples/CMakeLists.txt, the file is missing which is why it's not been
downloaded. I'll discuss with David to correct this but in the meantime,
it's available on Midas:
http://midas3.kitware.com/midas/community/28
Simon
On Tue, Mar 17, 2015 at 4:40 PM, Luc SIMON <uhqd75 at gmail.com> wrote:
> Dear Gaters,
>
>
> Sorry for multiple questions but when downloading data used for
> Example_Radiotherapy, I think a .raw file is missing : patient-4mm.raw
> (Example3)
>
> Again on mac it is not obvious to understand what file in MD5/ is the good
> .raw used for an example (see list hereafter, as it is displayed using ls
> command).
>
> But using the .md5 information it is possible to compute the size (in
> bytes).
>
>
> In Example2, patient-2mm is a 126x126x111 image of short (2 bytes) =
> 3524472 bytes. In this list it is the 8th file. It is possible to create a
> symbolic link to this file and example2 works very well
>
>
> In Example3, patient-4mm is a 63x93x55 image of short = 436590 bytes. No
> file has this size in the list.
>
> To summarize, can someone send me patient-4mm.raw ? (uhqd75 at gmail.com)
>
> Thanks for any help
>
>
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> 2015-03-16 8:33 GMT+01:00 David Sarrut <David.Sarrut at creatis.insa-lyon.fr>
> :
>
>> Hello Luc,
>>
>> did the file patient-2mm.raw exists ? An image is stored with 2 files :
>> A.mhd (the header) and A.raw (the pixel data).
>>
>> If not, in cmake, set GATE_DOWNLOAD_EXAMPLES_DATA to ON to download the
>> data
>>
>> welcome back to Gate ;)
>> David
>>
>> On Thu, Mar 12, 2015 at 10:46 PM, Luc SIMON <uhqd75 at gmail.com> wrote:
>>
>>> Dear Gaters
>>>
>>> It is a real pleasure to me to come back here after a 12 years break. I
>>> worked previously in Lausanne at the very beginning of Gate v1...
>>> I am going to use Gate again for new purposes, in particular in RT.
>>> Well... a lot to learn with all these new features.
>>> I start with a newbee question, but if someone can help...
>>>
>>> I installed GATE V7 on a mac book Yosemite 10.10.2
>>> my configuration is at the end of this email, hereafter.
>>>
>>> Well It half works.
>>> I execute some exemples of Geant4 and GATE with success (PETcylindrilcal
>>> is ok with visualization !!)
>>> But I try to execute Radiotherapy examples and it doesn't work.
>>>
>>> I tried example_Radiotherapy/example2/mac/main-NPV1.mac
>>>
>>> and it doesnt work.
>>> The following command :
>>>
>>> Idle> /control/execute mac/start.mac
>>>
>>> gives :
>>>
>>> [Core-0] Initialization of geometry
>>>
>>> MetaImage: Read: Cannot open data file
>>>
>>> GateMHDImage.cc (l.185): MHD File cannot be read: data/patient-2mm.mhd
>>>
>>>
>>> I checked the rwx rights of the file patient-2mm.mhd
>>>
>>> and it is ok (rwxrwxrwx)
>>>
>>>
>>> Can someone has the same problem ?
>>>
>>> I must add that I changed
>>>
>>> #/vis/open OGLIQt
>>> to
>>>
>>> /vis/open OGLSX
>>>
>>> because it didn't work with OGLIQt
>>>
>>> Thank you
>>>
>>>
>>>
>>>
>>>
>>>
>>> config :
>>>
>>> CMAKE 3.1.3
>>>
>>> xcode 6.1.1
>>>
>>> xquartz 2.7.7
>>>
>>> cmake 2.8.12.2
>>>
>>> CLHEP 2.1.3.1
>>>
>>> root v5.34.26
>>>
>>> GEANT4.9.6p04
>>>
>>> GATE v7.0
>>>
>>> --
>>> ___________________
>>>
>>> SIMON Luc, PhD
>>> 28, rue Pierre Barthes
>>> 31500 Toulouse
>>>
>>> _______________________________________________
>>> Gate-users mailing list
>>> Gate-users at lists.opengatecollaboration.org
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>>
>>
>>
>>
>> --
>> David Sarrut, Phd
>> Directeur de recherche CNRS
>> CREATIS, UMR CNRS 5220, Inserm U 1044
>> Centre de lutte contre le cancer Léon Bérard
>> 28 rue Laënnec, 69373 Lyon cedex 08
>> Tel : 04 78 78 51 51 / 06 74 72 05 42
>> http://www.creatis.insa-lyon.fr/~dsarrut
>> _________________________________
>> "2 + 2 = 5, for extremely large values of 2"
>> _________________________________
>>
>
>
>
> --
> ___________________
>
> SIMON Luc, PhD
> IUCT-Oncopole / CRCT Team 15
>
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
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