[Gate-users] Compile gjs

[STRYDHORST Jared]

The parameter after -cs must be a template for the condor submit file (condor.script on my system), not the gate macro file which goes last on the command line without any switches preceeding it.

Jared STRYDHORST

Laboratoire Imagerie Moléculaire In Vivo (IMIV)
UMR 1023 Inserm/CEA/Université Paris Sud - ERL 9218 CNRS
CEA/I2BM/Service Hospitalier Frédéric Joliot
4, place du Général Leclerc
91401 ORSAY Cedex

http://i2bm.cea.fr/dsv/i2bm/shfj/imiv

________________________________________
De : gate-users-bounces at lists.opengatecollaboration.org [gate-users-bounces at lists.opengatecollaboration.org] de la part de Santos, Roque [rsantost at vols.utk.edu]
Envoyé : dimanche 13 décembre 2015 17:11
À : gate-users at lists.opengatecollaboration.org
Objet : [Gate-users] Compile gjs

Hello,

I need help with gjs job splitter. I'm working in Ubuntu 10.04. I used Gate in this platform and in Mac, and I noticed that in Mac Gate runs a little faster. I need to increase the speed of the simulation, so I started to try to use gjs.

At first I couldn't install it because my installation procedure oF GATE does not generate env_gate.sh. (I look for the file in all my computer). I had to use Geant4Config.sh instead.
Then, gjs wasn't able to compile, I don't know why. The error message was "./src/GateMacfileParser.cc:41:26: error: 'getpid' was not declare in this scope..."
In a forum I found that if you include <unistd.h> in the  GateMacfileParse.hh, you will be able to compile the code. I did that and the code compiled.
However after that, when I run gjs I have the message " your macro file given in parameter does not have any extension. Please give it the .mac extension." I don't think is a problem of the extension because I'm writing the name of mi file followed with ".mac". The command line that I'm using to run gjs is: "./gjs -n 8 -cs inveonPET01.mac"

I'm a chemical engineer pursuing a graduate degree in nuclear engineering. I don't have enough background in programming or compiling or using cmake, etc. I really need help.

I would appreciate your help.

Greeting,

Roque

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