[Gate-users] Gate-users Digest, Vol 82, Issue 6
mariam zoubair
zoubair-mariam at hotmail.fr
Wed Mar 6 16:49:29 CET 2013
Hi Marco
Thank you for your help
> From: gate-users-request at lists.opengatecollaboration.org
> Subject: Gate-users Digest, Vol 82, Issue 6
> To: gate-users at lists.opengatecollaboration.org
> Date: Tue, 5 Mar 2013 17:52:03 +0100
>
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> Today's Topics:
>
> 1. Re: problem with voxelez the phantom and the source
> (Marc Chamberland)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 5 Mar 2013 16:54:42 +0000
> From: Marc Chamberland <MarcChamberland at cmail.carleton.ca>
> To: mariam zoubair <zoubair-mariam at hotmail.fr>
> Cc: "<gate-users at lists.opengatecollaboration.org>"
> <gate-users at lists.opengatecollaboration.org>
> Subject: Re: [Gate-users] problem with voxelez the phantom and the
> source
> Message-ID: <1E5471BF-305F-4E07-8A15-DB43432C2612 at cmail.carleton.ca>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi,
>
> Gate is already telling you that a few things are wrong.
>
> Here, it says that you used the wrong name for the physics processes (assuming you are running Gate v6.2)
>
> > <!> *** WARNING *** <!> Unknown process: PositronAnnihilationStd
> > <!> *** WARNING *** <!> Unknown process: MultipleScattering
> > <!> *** WARNING *** <!> Unknown process: MultipleScattering
>
> For positron annihilation, you should use:
>
> /gate/physics/addProcess PositronAnnihilation e+
>
> For multiple scattering, you should use:
>
> /gate/physics/addProcess eMultipleScattering e-
> /gate/physics/addProcess eMultipleScattering e+
>
> Please refer to the user guide: http://wiki.opengatecollaboration.org/index.php/Users_Guide_V6.2:Setting_up_the_physics#Positron_and_electron_annihilation
>
>
> Also, Gate is complaining that it cannot open some of your header file:
>
> > '!ror: Could not open header file 'm001-IM00120.i33
>
> In fact, it seems like it's trying to open your image file (.i33) instead of the header file (.h33). You'll want to have a close look at this and make sure you're supplying the correct files and the correct paths. I seem to remember Gate having trouble with relative paths to these files (I think), so you might want to investigate.
>
> Marc
>
>
>
> __________________________
>
> Marc Chamberland, MSc
> PhD candidate
> Department of Physics
> Carleton University
> Ottawa (ON)
>
> On 2013-03-05, at 11:34 AM, mariam zoubair <zoubair-mariam at hotmail.fr>
> wrote:
>
> >
> > Dear Gate users
> >
> > I try to follow all the steps to run CT scanner, I have an image of 512 x 512 pixels. I'm voxelez the phantom and the source (position = -256, -256, 0) but I have not seen any interaction and I have this message.
> >
> >
> > Can you help me
> >
> > Thank you
> >
> >
> > /tracking/storeTrajectory 1
> > Attributes available for modeling and filtering with
> > "/vis/modeling/trajectories/create/drawByAttribute" and
> > "/vis/filtering/trajectories/create/attributeFilter" commands:
> > G4Trajectory:
> > Charge (Ch): unit: e+ (G4double)
> > Track ID (ID): G4int
> > Initial kinetic energy (IKE): G4BestUnit (G4double)
> > Initial momentum magnitude (IMag): G4BestUnit (G4double)
> > Initial momentum (IMom): G4BestUnit (G4ThreeVector)
> > No. of points (NTP): G4int
> >
> >
> > PDG Encoding (PDG): G4int
> > Parent ID (PID): G4int
> > Particle Name (PN): G4String
> > G4TrajectoryPoint:
> > Position (Pos): G4BestUnit (G4ThreeVector)
> > WARNING: Trajectory storing has been requested. This action may be
> > reversed with "/tracking/storeTrajectory 0".
> > WARNING: The vis manager will keep up to 100 events.
> > This may use a lot of memory.
> > It may be changed with, e.g., "/vis/scene/endOfEventAction accumulate 10".
> > CREATED THE COMMAND /gate/systems/cylindricalPET/addAnewRsector
> > Call VoxelParameterized::InsertReader
> > Range Translator
> > Range 0 : imageValue in [ 0.000e+00 , 1.500e+03 ] ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01)
> > Range 1 : imageValue in [ 1.501e+03 , 2.250e+03 ] ---> material Water, visibility 1, coulour (1.000e+00,0.000e+00,0.000e+00,2.000e-01)
> > Range 2 : imageValue in [ 2.251e+03 , 2.750e+03 ] ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01)
> > Range 3 : imageValue in [ 2.751e+03 , 3.848e+03 ] ---> material RibBone, visibility 1, coulour (0.000e+00,0.000e+00,1.000e+00,2.000e-01)
> > ', assuming default BIGENDIAN'LITTLEENDIAN
> >
> > 'nrecognised type name 'unsigned integer
> > Header read from 'CT-IM00120_uint16.h33'
> > 'Data file name 'm001-IM00120.i33
> > Nb of planes: 1
> > Nb of pixels per plane: 512 512
> > Pixel size: 4.590e-01 4.590e-01
> > Slice thickness: 2.179e+00
> > Matrix size: 2.350e+02 2.350e+02
> > Data type:
> > Data byte order: BIGENDIAN
> >
> >
> > '!ror: Could not open header file 'm001-IM00120.i33
> > <!> *** WARNING *** <!> Unknown process: PositronAnnihilationStd
> > <!> *** WARNING *** <!> Unknown process: MultipleScattering
> > <!> *** WARNING *** <!> Unknown process: MultipleScattering
> >
> > List of Enabled processes:
> >
> >
> > === Process: PhotoElectric ===
> > Particle: gamma
> > * Model(s):
> > - StandardModel
> >
> > === Process: Compton ===
> > Particle: gamma
> > * Model(s):
> > - StandardModel
> >
> > === Process: Bremsstrahlung ===
> > Particle: e+
> > * Model(s):
> > - StandardModel
> > Particle: e-
> > * Model(s):
> > - StandardModel
> >
> > === Process: ElectronIonisation ===
> > Particle: e+
> > * Model(s):
> > - StandardModel
> > Particle: e-
> > * Model(s):
> > - StandardModel
> >
> > List of initialized processes:
> >
> > [Core-0] Initialization of geometry
> > G4PhysicalVolumeModel::Validate(): A volume of the same name and
> > copy number ("world_phys", copy 0) still exists and is being used.
> > But it is not the same volume you originally specified
> > in /vis/scene/add/.
> > [Core-0] Initialization of physics
> > [Core-0] Initialization of actors
> > GATE object: 'systems/cylindricalPET'
> >
> > Components:
> >
> > GATE object: 'systems/cylindricalPET/base'
> > Attached to volume: cylindricalPET
> > Nb of children: 1
> >
> > GATE object: 'systems/cylindricalPET/rsector'
> > Attached to volume: head
> > Nb of children: 1
> >
> > GATE object: 'systems/cylindricalPET/module'
> > Attached to volume: ---
> > Nb of children: 1
> >
> > GATE object: 'systems/cylindricalPET/submodule'
> > GATE object: 'systems/cylindricalPET/submodule'
> > Attached to volume: block
> > Nb of children: 1
> >
> > GATE object: 'systems/cylindricalPET/crystal'
> > Attached to volume: crystal
> > Nb of children: 4
> >
> > GATE object: 'systems/cylindricalPET/layer0'
> > Attached to volume: LYSO
> > Nb of children: 0
> >
> > GATE object: 'systems/cylindricalPET/layer1'
> > Attached to volume: LSO
> > Nb of children: 0
> >
> > GATE object: 'systems/cylindricalPET/layer2'
> > Attached to volume: ---
> > Nb of children: 0
> >
> > GATE object: 'systems/cylindricalPET/layer3'
> > Attached to volume: ---
> > Nb of children: 0
> > geometrical design type: 1
> > ring diameter: -1.750e+01 cm
> > rsector axial pitch: 0.000e+00 fm
> > rsector azimuthal pitch: -4.500e+01 degree
> > rsector tangential size: 2.000e+00 cm
> > rsector axial size: 2.530e+01 cm
> > module axial size: 2.530e+01 cm
> > module tangential size: 2.000e+00 cm
> > module axial pitch: 0.000e+00 fm
> > module tangential pitch: 0.000e+00 fm
> > submodule axial size: 1.900e+00 cm
> > submodule tangential size: 2.000e+00 cm
> > submodule axial pitch: 1.950e+00 cm
> > submodule tangential pitch: 0.000e+00 fm
> > crystal radial size: 2.200e+00 mm
> > crystal axial size: 2.200e+00 mm
> > crystal tangential size: 2.000e+00 cm
> > crystal axial pitch: 2.400e+00 mm
> > crystal tangential pitch: 0.000e+00 fm
> > layer0 radial size: 2.200e+00 mm
> > in layer0 interaction length: 1.100e+00 mm
> > layer1 radial size: 2.200e+00 mm
> > in layer1 interaction length: 1.100e+00 mm
> > Axial nb of rsectors: 1
> > Azimuthal nb of rsectors: 8
> > Axial nb of modules: 1
> > Tangential nb of modules: 1
> > Axial nb of submodules: 13
> > Tangential nb of submodules: 1
> > Axial nb of crystals: 8
> > Tangential nb of crystals: 1
> > Radial nb of layers: 2
> > Range Translator
> > Range 0 : imageValue in [ 0.000e+00 , 1.500e+03 ] ---> activity (Bq) 0.000e+00
> > Range 1 : imageValue in [ 1.501e+03 , 2.250e+03 ] ---> activity (Bq) 1.000e+01
> > Range 2 : imageValue in [ 2.251e+03 , 2.750e+03 ] ---> activity (Bq) 2.000e+01
> > Range 3 : imageValue in [ 2.751e+03 , 3.848e+03 ] ---> activity (Bq) 3.000e+01
> > GateSourceVoxelImageReader::ReadFile : fileName: CT-IM00120_uint16.h33
> >
> > ', assuming default BIGENDIAN'LITTLEENDIAN
> >
> > 'nrecognised type name 'unsigned integer
> > Header read from 'CT-IM00120_uint16.h33'
> > 'Data file name 'm001-IM00120.i33
> > Nb of planes: 1
> > Nb of pixels per plane: 512 512
> > Pixel size: 4.590e-01 4.590e-01
> > Slice thickness: 2.179e+00
> > Matrix size: 2.350e+02 2.350e+02
> > Data type:
> > Data byte order: BIGENDIAN
> >
> >
> > '!ror: Could not open header file 'm001-IM00120.i33
> > **** Error: Volume does not exist ****
> > Ignoring confine condition
> > Source ---------------> voxel_brain
> > ID : 0
> > type : backtoback
> > startTime (s) : 0.000e+00
> > time (s) : 0.000e+00
> > forcedUnstable : 0
> > verboseLevel : 0
> > -----------------------
> > Voxel reader ----------> number of voxels : 0
> > total activity (Bq) : 0.000e+00
> > position (mm) : 0.000e+00 0.000e+00 0.000e+00
> > voxel size (mm) : 1.000e+00 1.000e+00 1.000e+00
> > Source --------------> voxel_brain
> > ID : 0
> > type : backtoback
> > activity (Bq) : 0.000e+00
> > startTime (s) : 0.000e+00
> > time (s) : 0.000e+00
> > forcedUnstable : 0
> > forcedHalfLife (s) : -6.931e-01
> > verboseLevel : 0
> > relative to vol : World
> > ----------------------
> >
> > GPS info ---------------->
> > particle : gamma
> > SourcePosType : Point
> > Shape : NULL
> > halfx,halfy,halfz (mm) : 0.000e+00 0.000e+00 0.000e+00
> > Radius (mm) : 0.000e+00
> > CentreCoords (mm) : 0.000e+00 0.000e+00 0.000e+00
> > EnergyDisType : Mono
> > AngleDisType : iso
> > MinTheta, MaxTheta (deg) : 0.000e+00 1.800e+02
> > MinPhi, MaxPhi (deg) : 0.000e+00 3.600e+02
> > --------------------------
> >
> > GateSourceMgr::ListSources: List of the sources in the source manager
> > Source ---------------> voxel_brain
> > ID : 0
> > type : backtoback
> > startTime (s) : 0.000e+00
> > time (s) : 0.000e+00
> > forcedUnstable : 0
> >
> > verboseLevel : 0
> > -----------------------
> > ***** COMMAND NOT FOUND </gate/output/root/setRootdelayFlag 1> *****
> >
> > ***** Batch is interrupted!! *****
> > [Acquisition-0]
> > [Acquisition-0] ============= Source initialization =============
> > [Acquisition-0]
> > [Acquisition-0] ============= Acquisition starts! =============
> > [Acquisition-0] Simulation start time = 0 sec
> > [Acquisition-0] Simulation end time = 2.5 sec
> > [Acquisition-0] Simulation will have = 1 run(s)
> > [Acquisition-0]
> > [Acquisition-0] Slice 0 from 0 to 2.5 s [slice=2.5 s], final stop at 2.5 s.
> >
> > PhotoElectric: for gamma SubType= 12
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > PhotoElectric : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV
> >
> > Compton: for gamma SubType= 13
> > Lambda tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins, spline: 1
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > Klein-Nishina : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV
> >
> > Bremsstrahlung: for e- SubType= 3
> > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins
> > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
> > LPM flag: 1 for E > 1.000e+00 GeV
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > eBremSB : Emin= 0.000e+00 eV Emax= 1.000e+00 GeV AngularGenUrban
> > eBremLPM : Emin= 1.000e+00 GeV Emax= 1.000e+01 TeV AngularGenUrban
> >
> > ElectronIonisation: for e- SubType= 2
> > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins
> > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
> > finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > MollerBhabha : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV
> >
> > Bremsstrahlung: for e+ SubType= 3
> > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins
> > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
> > LPM flag: 1 for E > 1.000e+00 GeV
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > eBremSB : Emin= 0.000e+00 eV Emax= 1.000e+00 GeV AngularGenUrban
> > eBremLPM : Emin= 1.000e+00 GeV Emax= 1.000e+01 TeV AngularGenUrban
> >
> > ElectronIonisation: for e+ SubType= 2
> > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins
> > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
> > finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > MollerBhabha : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV
> > 1 event has been kept for refreshing and/or reviewing.
> > User simulation time (sec) := 4.900e-01
> > Real simulation time (sec) := 2.860e+00
> > System simulation time (sec) := 6.000e-02
> > [Core-0] End of macro hrrt.mac
> > GateOutputMgr deleting...
> > Graphics systems deleted.
> > Visualization Manager deleting...
> > WARNING - Attempt to delete the physical volume store while geometry closed !
> > WARNING - Attempt to delete the logical volume store while geometry closed !
> > WARNING - Attempt to delete the solid store while geometry closed !
> > WARNING - Attempt to delete the region store while geometry closed !
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> > From: zoubair-mariam at hotmail.fr
> > To: gate-users at lists.opengatecollaboration.org
> > Subject: problem with voxelez the phantom and the source
> > Date: Tue, 5 Mar 2013 16:21:43 +0000
> >
> > Dear Gate users
> >
> > I try to follow all the steps to run CT scanner, I have an image of 512 x 512 pixels. I'm voxelez the phantom and the source (position = -256, -256, 0) but I have not seen any interaction and I have this message.
> >
> >
> > Can you help me
> >
> > Thank you
> >
> >
> >
> > /tracking/storeTrajectory 1
> > Attributes available for modeling and filtering with
> > "/vis/modeling/trajectories/create/drawByAttribute" and
> > "/vis/filtering/trajectories/create/attributeFilter" commands:
> > G4Trajectory:
> > Charge (Ch): unit: e+ (G4double)
> > Track ID (ID): G4int
> > Initial kinetic energy (IKE): G4BestUnit (G4double)
> > Initial momentum magnitude (IMag): G4BestUnit (G4double)
> > Initial momentum (IMom): G4BestUnit (G4ThreeVector)
> > No. of points (NTP): G4int
> >
> >
> > PDG Encoding (PDG): G4int
> > Parent ID (PID): G4int
> > Particle Name (PN): G4String
> > G4TrajectoryPoint:
> > Position (Pos): G4BestUnit (G4ThreeVector)
> > WARNING: Trajectory storing has been requested. This action may be
> > reversed with "/tracking/storeTrajectory 0".
> > WARNING: The vis manager will keep up to 100 events.
> > This may use a lot of memory.
> > It may be changed with, e.g., "/vis/scene/endOfEventAction accumulate 10".
> > CREATED THE COMMAND /gate/systems/cylindricalPET/addAnewRsector
> > Call VoxelParameterized::InsertReader
> > Range Translator
> > Range 0 : imageValue in [ 0.000e+00 , 1.500e+03 ] ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01)
> > Range 1 : imageValue in [ 1.501e+03 , 2.250e+03 ] ---> material Water, visibility 1, coulour (1.000e+00,0.000e+00,0.000e+00,2.000e-01)
> > Range 2 : imageValue in [ 2.251e+03 , 2.750e+03 ] ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01)
> > Range 3 : imageValue in [ 2.751e+03 , 3.848e+03 ] ---> material RibBone, visibility 1, coulour (0.000e+00,0.000e+00,1.000e+00,2.000e-01)
> > ', assuming default BIGENDIAN'LITTLEENDIAN
> >
> > 'nrecognised type name 'unsigned integer
> > Header read from 'CT-IM00120_uint16.h33'
> > 'Data file name 'm001-IM00120.i33
> > Nb of planes: 1
> > Nb of pixels per plane: 512 512
> > Pixel size: 4.590e-01 4.590e-01
> > Slice thickness: 2.179e+00
> > Matrix size: 2.350e+02 2.350e+02
> > Data type:
> > Data byte order: BIGENDIAN
> >
> >
> > '!ror: Could not open header file 'm001-IM00120.i33
> > <!> *** WARNING *** <!> Unknown process: PositronAnnihilationStd
> > <!> *** WARNING *** <!> Unknown process: MultipleScattering
> > <!> *** WARNING *** <!> Unknown process: MultipleScattering
> >
> >
> >
> > List of Enabled processes:
> >
> >
> > === Process: PhotoElectric ===
> > Particle: gamma
> > * Model(s):
> > - StandardModel
> >
> > === Process: Compton ===
> > Particle: gamma
> > * Model(s):
> > - StandardModel
> >
> > === Process: Bremsstrahlung ===
> > Particle: e+
> > * Model(s):
> > - StandardModel
> > Particle: e-
> > * Model(s):
> > - StandardModel
> >
> > === Process: ElectronIonisation ===
> > Particle: e+
> > * Model(s):
> > - StandardModel
> > Particle: e-
> > * Model(s):
> > - StandardModel
> >
> > List of initialized processes:
> >
> > [Core-0] Initialization of geometry
> > G4PhysicalVolumeModel::Validate(): A volume of the same name and
> > copy number ("world_phys", copy 0) still exists and is being used.
> > But it is not the same volume you originally specified
> > in /vis/scene/add/.
> > [Core-0] Initialization of physics
> > [Core-0] Initialization of actors
> >
> > GATE object: 'systems/cylindricalPET'
> >
> > Components:
> >
> > GATE object: 'systems/cylindricalPET/base'
> > Attached to volume: cylindricalPET
> > Nb of children: 1
> >
> > GATE object: 'systems/cylindricalPET/rsector'
> > Attached to volume: head
> > Nb of children: 1
> >
> > GATE object: 'systems/cylindricalPET/module'
> > Attached to volume: ---
> > Nb of children: 1
> >
> > GATE object: 'systems/cylindricalPET/submodule'
> > Attached to volume: block
> > Nb of children: 1
> >
> > GATE object: 'systems/cylindricalPET/crystal'
> > Attached to volume: crystal
> > Nb of children: 4
> >
> > GATE object: 'systems/cylindricalPET/layer0'
> > Attached to volume: LYSO
> > Nb of children: 0
> >
> > GATE object: 'systems/cylindricalPET/layer1'
> > Attached to volume: LSO
> > Nb of children: 0
> >
> > GATE object: 'systems/cylindricalPET/layer2'
> > Attached to volume: ---
> > Nb of children: 0
> >
> > GATE object: 'systems/cylindricalPET/layer3'
> > Attached to volume: ---
> > Nb of children: 0
> > geometrical design type: 1
> > ring diameter: -1.750e+01 cm
> > rsector axial pitch: 0.000e+00 fm
> > rsector azimuthal pitch: -4.500e+01 degree
> > rsector tangential size: 2.000e+00 cm
> > rsector axial size: 2.530e+01 cm
> > module axial size: 2.530e+01 cm
> > module tangential size: 2.000e+00 cm
> > module axial pitch: 0.000e+00 fm
> > module tangential pitch: 0.000e+00 fm
> > submodule axial size: 1.900e+00 cm
> > submodule tangential size: 2.000e+00 cm
> > submodule axial pitch: 1.950e+00 cm
> > submodule tangential pitch: 0.000e+00 fm
> > crystal radial size: 2.200e+00 mm
> > crystal axial size: 2.200e+00 mm
> > crystal tangential size: 2.000e+00 cm
> > crystal axial pitch: 2.400e+00 mm
> > crystal tangential pitch: 0.000e+00 fm
> > layer0 radial size: 2.200e+00 mm
> > in layer0 interaction length: 1.100e+00 mm
> > layer1 radial size: 2.200e+00 mm
> > in layer1 interaction length: 1.100e+00 mm
> > Axial nb of rsectors: 1
> > Azimuthal nb of rsectors: 8
> > Axial nb of modules: 1
> > Tangential nb of modules: 1
> > Axial nb of submodules: 13
> > Tangential nb of submodules: 1
> > Axial nb of crystals: 8
> > Tangential nb of crystals: 1
> > Radial nb of layers: 2
> > Range Translator
> > Range 0 : imageValue in [ 0.000e+00 , 1.500e+03 ] ---> activity (Bq) 0.000e+00
> > Range 1 : imageValue in [ 1.501e+03 , 2.250e+03 ] ---> activity (Bq) 1.000e+01
> > Range 2 : imageValue in [ 2.251e+03 , 2.750e+03 ] ---> activity (Bq) 2.000e+01
> > Range 3 : imageValue in [ 2.751e+03 , 3.848e+03 ] ---> activity (Bq) 3.000e+01
> > GateSourceVoxelImageReader::ReadFile : fileName: CT-IM00120_uint16.h33
> > ', assuming default BIGENDIAN'LITTLEENDIAN
> >
> > 'nrecognised type name 'unsigned integer
> > Header read from 'CT-IM00120_uint16.h33'
> > 'Data file name 'm001-IM00120.i33
> > Nb of planes: 1
> > Nb of pixels per plane: 512 512
> > Pixel size: 4.590e-01 4.590e-01
> > Slice thickness: 2.179e+00
> > Matrix size: 2.350e+02 2.350e+02
> > Data type:
> > Data byte order: BIGENDIAN
> >
> >
> > '!ror: Could not open header file 'm001-IM00120.i33
> > **** Error: Volume does not exist ****
> > Ignoring confine condition
> > Source ---------------> voxel_brain
> > ID : 0
> > type : backtoback
> > startTime (s) : 0.000e+00
> > time (s) : 0.000e+00
> > forcedUnstable : 0
> > verboseLevel : 0
> > -----------------------
> > Voxel reader ----------> number of voxels : 0
> > total activity (Bq) : 0.000e+00
> > position (mm) : 0.000e+00 0.000e+00 0.000e+00
> > voxel size (mm) : 1.000e+00 1.000e+00 1.000e+00
> > Source --------------> voxel_brain
> > ID : 0
> > type : backtoback
> > activity (Bq) : 0.000e+00
> > startTime (s) : 0.000e+00
> > time (s) : 0.000e+00
> > forcedUnstable : 0
> > forcedHalfLife (s) : -6.931e-01
> > verboseLevel : 0
> > relative to vol : World
> > ----------------------
> >
> > GPS info ---------------->
> > particle : gamma
> > SourcePosType : Point
> > Shape : NULL
> > halfx,halfy,halfz (mm) : 0.000e+00 0.000e+00 0.000e+00
> > Radius (mm) : 0.000e+00
> > CentreCoords (mm) : 0.000e+00 0.000e+00 0.000e+00
> > EnergyDisType : Mono
> > AngleDisType : iso
> > MinTheta, MaxTheta (deg) : 0.000e+00 1.800e+02
> > MinPhi, MaxPhi (deg) : 0.000e+00 3.600e+02
> > --------------------------
> >
> > GateSourceMgr::ListSources: List of the sources in the source manager
> > Source ---------------> voxel_brain
> > ID : 0
> > type : backtoback
> > startTime (s) : 0.000e+00
> > time (s) : 0.000e+00
> > forcedUnstable : 0
> >
> > verboseLevel : 0
> > -----------------------
> > ***** COMMAND NOT FOUND </gate/output/root/setRootdelayFlag 1> *****
> >
> > ***** Batch is interrupted!! *****
> > [Acquisition-0]
> > [Acquisition-0] ============= Source initialization =============
> > [Acquisition-0]
> > [Acquisition-0] ============= Acquisition starts! =============
> > [Acquisition-0] Simulation start time = 0 sec
> > [Acquisition-0] Simulation end time = 2.5 sec
> > [Acquisition-0] Simulation will have = 1 run(s)
> > [Acquisition-0]
> > [Acquisition-0] Slice 0 from 0 to 2.5 s [slice=2.5 s], final stop at 2.5 s.
> >
> > PhotoElectric: for gamma SubType= 12
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > PhotoElectric : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV
> >
> > Compton: for gamma SubType= 13
> > Lambda tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins, spline: 1
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > Klein-Nishina : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV
> >
> > Bremsstrahlung: for e- SubType= 3
> > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins
> > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
> > LPM flag: 1 for E > 1.000e+00 GeV
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > eBremSB : Emin= 0.000e+00 eV Emax= 1.000e+00 GeV AngularGenUrban
> > eBremLPM : Emin= 1.000e+00 GeV Emax= 1.000e+01 TeV AngularGenUrban
> >
> > ElectronIonisation: for e- SubType= 2
> > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins
> > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
> > finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > MollerBhabha : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV
> >
> > Bremsstrahlung: for e+ SubType= 3
> > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins
> > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
> > LPM flag: 1 for E > 1.000e+00 GeV
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > eBremSB : Emin= 0.000e+00 eV Emax= 1.000e+00 GeV AngularGenUrban
> > eBremLPM : Emin= 1.000e+00 GeV Emax= 1.000e+01 TeV AngularGenUrban
> >
> > ElectronIonisation: for e+ SubType= 2
> > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins
> > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
> > finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02
> > ===== EM models for the G4Region DefaultRegionForTheWorld ======
> > MollerBhabha : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV
> > 1 event has been kept for refreshing and/or reviewing.
> > User simulation time (sec) := 4.900e-01
> > Real simulation time (sec) := 2.860e+00
> > System simulation time (sec) := 6.000e-02
> > [Core-0] End of macro hrrt.mac
> > GateOutputMgr deleting...
> > Graphics systems deleted.
> > Visualization Manager deleting...
> > WARNING - Attempt to delete the physical volume store while geometry closed !
> > WARNING - Attempt to delete the logical volume store while geometry closed !
> > WARNING - Attempt to delete the solid store while geometry closed !
> > WARNING - Attempt to delete the region store while geometry closed !
> >
> >
> >
> >
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
>
>
>
> ------------------------------
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
> End of Gate-users Digest, Vol 82, Issue 6
> *****************************************
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