<html> <head> <style></style></head> <body class='hmmessage'><div dir='ltr'> Hi Marco<div> </div><div> </div><div>Thank you for your help <a href="http://www.bicoeur.com/" target="_blank"> </a> <a href="http://www.bicoeur.com/" target="_blank"> </a> <div><div id="SkyDrivePlaceholder"></div>> From: gate-users-request@lists.opengatecollaboration.org > Subject: Gate-users Digest, Vol 82, Issue 6 > To: gate-users@lists.opengatecollaboration.org > Date: Tue, 5 Mar 2013 17:52:03 +0100 > > Send Gate-users mailing list submissions to > gate-users@lists.opengatecollaboration.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users > or, via email, send a message with subject or body 'help' to > gate-users-request@lists.opengatecollaboration.org > > You can reach the person managing the list at > gate-users-owner@lists.opengatecollaboration.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Gate-users digest..." > > > Today's Topics: > > 1. Re: problem with voxelez the phantom and the source > (Marc Chamberland) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 5 Mar 2013 16:54:42 +0000 > From: Marc Chamberland <MarcChamberland@cmail.carleton.ca> > To: mariam zoubair <zoubair-mariam@hotmail.fr> > Cc: "<gate-users@lists.opengatecollaboration.org>" > <gate-users@lists.opengatecollaboration.org> > Subject: Re: [Gate-users] problem with voxelez the phantom and the > source > Message-ID: <1E5471BF-305F-4E07-8A15-DB43432C2612@cmail.carleton.ca> > Content-Type: text/plain; charset="iso-8859-1" > > Hi, > > Gate is already telling you that a few things are wrong. > > Here, it says that you used the wrong name for the physics processes (assuming you are running Gate v6.2) > > > <!> *** WARNING *** <!> Unknown process: PositronAnnihilationStd > > <!> *** WARNING *** <!> Unknown process: MultipleScattering > > <!> *** WARNING *** <!> Unknown process: MultipleScattering > > For positron annihilation, you should use: > > /gate/physics/addProcess PositronAnnihilation e+ > > For multiple scattering, you should use: > > /gate/physics/addProcess eMultipleScattering e- > /gate/physics/addProcess eMultipleScattering e+ > > Please refer to the user guide: http://wiki.opengatecollaboration.org/index.php/Users_Guide_V6.2:Setting_up_the_physics#Positron_and_electron_annihilation > > > Also, Gate is complaining that it cannot open some of your header file: > > > '!ror: Could not open header file 'm001-IM00120.i33 > > In fact, it seems like it's trying to open your image file (.i33) instead of the header file (.h33). You'll want to have a close look at this and make sure you're supplying the correct files and the correct paths. I seem to remember Gate having trouble with relative paths to these files (I think), so you might want to investigate. > > Marc > > > > __________________________ > > Marc Chamberland, MSc > PhD candidate > Department of Physics > Carleton University > Ottawa (ON) > > On 2013-03-05, at 11:34 AM, mariam zoubair <zoubair-mariam@hotmail.fr> > wrote: > > > > > Dear Gate users > > > > I try to follow all the steps to run CT scanner, I have an image of 512 x 512 pixels. I'm voxelez the phantom and the source (position = -256, -256, 0) but I have not seen any interaction and I have this message. > > > > > > Can you help me > > > > Thank you > > > > > > /tracking/storeTrajectory 1 > > Attributes available for modeling and filtering with > > "/vis/modeling/trajectories/create/drawByAttribute" and > > "/vis/filtering/trajectories/create/attributeFilter" commands: > > G4Trajectory: > > Charge (Ch): unit: e+ (G4double) > > Track ID (ID): G4int > > Initial kinetic energy (IKE): G4BestUnit (G4double) > > Initial momentum magnitude (IMag): G4BestUnit (G4double) > > Initial momentum (IMom): G4BestUnit (G4ThreeVector) > > No. of points (NTP): G4int > > > > > > PDG Encoding (PDG): G4int > > Parent ID (PID): G4int > > Particle Name (PN): G4String > > G4TrajectoryPoint: > > Position (Pos): G4BestUnit (G4ThreeVector) > > WARNING: Trajectory storing has been requested. This action may be > > reversed with "/tracking/storeTrajectory 0". > > WARNING: The vis manager will keep up to 100 events. > > This may use a lot of memory. > > It may be changed with, e.g., "/vis/scene/endOfEventAction accumulate 10". > > CREATED THE COMMAND /gate/systems/cylindricalPET/addAnewRsector > > Call VoxelParameterized::InsertReader > > Range Translator > > Range 0 : imageValue in [ 0.000e+00 , 1.500e+03 ] ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01) > > Range 1 : imageValue in [ 1.501e+03 , 2.250e+03 ] ---> material Water, visibility 1, coulour (1.000e+00,0.000e+00,0.000e+00,2.000e-01) > > Range 2 : imageValue in [ 2.251e+03 , 2.750e+03 ] ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01) > > Range 3 : imageValue in [ 2.751e+03 , 3.848e+03 ] ---> material RibBone, visibility 1, coulour (0.000e+00,0.000e+00,1.000e+00,2.000e-01) > > ', assuming default BIGENDIAN'LITTLEENDIAN > > > > 'nrecognised type name 'unsigned integer > > Header read from 'CT-IM00120_uint16.h33' > > 'Data file name 'm001-IM00120.i33 > > Nb of planes: 1 > > Nb of pixels per plane: 512 512 > > Pixel size: 4.590e-01 4.590e-01 > > Slice thickness: 2.179e+00 > > Matrix size: 2.350e+02 2.350e+02 > > Data type: > > Data byte order: BIGENDIAN > > > > > > '!ror: Could not open header file 'm001-IM00120.i33 > > <!> *** WARNING *** <!> Unknown process: PositronAnnihilationStd > > <!> *** WARNING *** <!> Unknown process: MultipleScattering > > <!> *** WARNING *** <!> Unknown process: MultipleScattering > > > > List of Enabled processes: > > > > > > === Process: PhotoElectric === > > Particle: gamma > > * Model(s): > > - StandardModel > > > > === Process: Compton === > > Particle: gamma > > * Model(s): > > - StandardModel > > > > === Process: Bremsstrahlung === > > Particle: e+ > > * Model(s): > > - StandardModel > > Particle: e- > > * Model(s): > > - StandardModel > > > > === Process: ElectronIonisation === > > Particle: e+ > > * Model(s): > > - StandardModel > > Particle: e- > > * Model(s): > > - StandardModel > > > > List of initialized processes: > > > > [Core-0] Initialization of geometry > > G4PhysicalVolumeModel::Validate(): A volume of the same name and > > copy number ("world_phys", copy 0) still exists and is being used. > > But it is not the same volume you originally specified > > in /vis/scene/add/. > > [Core-0] Initialization of physics > > [Core-0] Initialization of actors > > GATE object: 'systems/cylindricalPET' > > > > Components: > > > > GATE object: 'systems/cylindricalPET/base' > > Attached to volume: cylindricalPET > > Nb of children: 1 > > > > GATE object: 'systems/cylindricalPET/rsector' > > Attached to volume: head > > Nb of children: 1 > > > > GATE object: 'systems/cylindricalPET/module' > > Attached to volume: --- > > Nb of children: 1 > > > > GATE object: 'systems/cylindricalPET/submodule' > > GATE object: 'systems/cylindricalPET/submodule' > > Attached to volume: block > > Nb of children: 1 > > > > GATE object: 'systems/cylindricalPET/crystal' > > Attached to volume: crystal > > Nb of children: 4 > > > > GATE object: 'systems/cylindricalPET/layer0' > > Attached to volume: LYSO > > Nb of children: 0 > > > > GATE object: 'systems/cylindricalPET/layer1' > > Attached to volume: LSO > > Nb of children: 0 > > > > GATE object: 'systems/cylindricalPET/layer2' > > Attached to volume: --- > > Nb of children: 0 > > > > GATE object: 'systems/cylindricalPET/layer3' > > Attached to volume: --- > > Nb of children: 0 > > geometrical design type: 1 > > ring diameter: -1.750e+01 cm > > rsector axial pitch: 0.000e+00 fm > > rsector azimuthal pitch: -4.500e+01 degree > > rsector tangential size: 2.000e+00 cm > > rsector axial size: 2.530e+01 cm > > module axial size: 2.530e+01 cm > > module tangential size: 2.000e+00 cm > > module axial pitch: 0.000e+00 fm > > module tangential pitch: 0.000e+00 fm > > submodule axial size: 1.900e+00 cm > > submodule tangential size: 2.000e+00 cm > > submodule axial pitch: 1.950e+00 cm > > submodule tangential pitch: 0.000e+00 fm > > crystal radial size: 2.200e+00 mm > > crystal axial size: 2.200e+00 mm > > crystal tangential size: 2.000e+00 cm > > crystal axial pitch: 2.400e+00 mm > > crystal tangential pitch: 0.000e+00 fm > > layer0 radial size: 2.200e+00 mm > > in layer0 interaction length: 1.100e+00 mm > > layer1 radial size: 2.200e+00 mm > > in layer1 interaction length: 1.100e+00 mm > > Axial nb of rsectors: 1 > > Azimuthal nb of rsectors: 8 > > Axial nb of modules: 1 > > Tangential nb of modules: 1 > > Axial nb of submodules: 13 > > Tangential nb of submodules: 1 > > Axial nb of crystals: 8 > > Tangential nb of crystals: 1 > > Radial nb of layers: 2 > > Range Translator > > Range 0 : imageValue in [ 0.000e+00 , 1.500e+03 ] ---> activity (Bq) 0.000e+00 > > Range 1 : imageValue in [ 1.501e+03 , 2.250e+03 ] ---> activity (Bq) 1.000e+01 > > Range 2 : imageValue in [ 2.251e+03 , 2.750e+03 ] ---> activity (Bq) 2.000e+01 > > Range 3 : imageValue in [ 2.751e+03 , 3.848e+03 ] ---> activity (Bq) 3.000e+01 > > GateSourceVoxelImageReader::ReadFile : fileName: CT-IM00120_uint16.h33 > > > > ', assuming default BIGENDIAN'LITTLEENDIAN > > > > 'nrecognised type name 'unsigned integer > > Header read from 'CT-IM00120_uint16.h33' > > 'Data file name 'm001-IM00120.i33 > > Nb of planes: 1 > > Nb of pixels per plane: 512 512 > > Pixel size: 4.590e-01 4.590e-01 > > Slice thickness: 2.179e+00 > > Matrix size: 2.350e+02 2.350e+02 > > Data type: > > Data byte order: BIGENDIAN > > > > > > '!ror: Could not open header file 'm001-IM00120.i33 > > **** Error: Volume does not exist **** > > Ignoring confine condition > > Source ---------------> voxel_brain > > ID : 0 > > type : backtoback > > startTime (s) : 0.000e+00 > > time (s) : 0.000e+00 > > forcedUnstable : 0 > > verboseLevel : 0 > > ----------------------- > > Voxel reader ----------> number of voxels : 0 > > total activity (Bq) : 0.000e+00 > > position (mm) : 0.000e+00 0.000e+00 0.000e+00 > > voxel size (mm) : 1.000e+00 1.000e+00 1.000e+00 > > Source --------------> voxel_brain > > ID : 0 > > type : backtoback > > activity (Bq) : 0.000e+00 > > startTime (s) : 0.000e+00 > > time (s) : 0.000e+00 > > forcedUnstable : 0 > > forcedHalfLife (s) : -6.931e-01 > > verboseLevel : 0 > > relative to vol : World > > ---------------------- > > > > GPS info ----------------> > > particle : gamma > > SourcePosType : Point > > Shape : NULL > > halfx,halfy,halfz (mm) : 0.000e+00 0.000e+00 0.000e+00 > > Radius (mm) : 0.000e+00 > > CentreCoords (mm) : 0.000e+00 0.000e+00 0.000e+00 > > EnergyDisType : Mono > > AngleDisType : iso > > MinTheta, MaxTheta (deg) : 0.000e+00 1.800e+02 > > MinPhi, MaxPhi (deg) : 0.000e+00 3.600e+02 > > -------------------------- > > > > GateSourceMgr::ListSources: List of the sources in the source manager > > Source ---------------> voxel_brain > > ID : 0 > > type : backtoback > > startTime (s) : 0.000e+00 > > time (s) : 0.000e+00 > > forcedUnstable : 0 > > > > verboseLevel : 0 > > ----------------------- > > ***** COMMAND NOT FOUND </gate/output/root/setRootdelayFlag 1> ***** > > > > ***** Batch is interrupted!! ***** > > [Acquisition-0] > > [Acquisition-0] ============= Source initialization ============= > > [Acquisition-0] > > [Acquisition-0] ============= Acquisition starts! ============= > > [Acquisition-0] Simulation start time = 0 sec > > [Acquisition-0] Simulation end time = 2.5 sec > > [Acquisition-0] Simulation will have = 1 run(s) > > [Acquisition-0] > > [Acquisition-0] Slice 0 from 0 to 2.5 s [slice=2.5 s], final stop at 2.5 s. > > > > PhotoElectric: for gamma SubType= 12 > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > PhotoElectric : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV > > > > Compton: for gamma SubType= 13 > > Lambda tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins, spline: 1 > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > Klein-Nishina : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV > > > > Bremsstrahlung: for e- SubType= 3 > > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins > > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1 > > LPM flag: 1 for E > 1.000e+00 GeV > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > eBremSB : Emin= 0.000e+00 eV Emax= 1.000e+00 GeV AngularGenUrban > > eBremLPM : Emin= 1.000e+00 GeV Emax= 1.000e+01 TeV AngularGenUrban > > > > ElectronIonisation: for e- SubType= 2 > > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins > > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1 > > finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02 > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > MollerBhabha : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV > > > > Bremsstrahlung: for e+ SubType= 3 > > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins > > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1 > > LPM flag: 1 for E > 1.000e+00 GeV > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > eBremSB : Emin= 0.000e+00 eV Emax= 1.000e+00 GeV AngularGenUrban > > eBremLPM : Emin= 1.000e+00 GeV Emax= 1.000e+01 TeV AngularGenUrban > > > > ElectronIonisation: for e+ SubType= 2 > > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins > > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1 > > finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02 > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > MollerBhabha : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV > > 1 event has been kept for refreshing and/or reviewing. > > User simulation time (sec) := 4.900e-01 > > Real simulation time (sec) := 2.860e+00 > > System simulation time (sec) := 6.000e-02 > > [Core-0] End of macro hrrt.mac > > GateOutputMgr deleting... > > Graphics systems deleted. > > Visualization Manager deleting... > > WARNING - Attempt to delete the physical volume store while geometry closed ! > > WARNING - Attempt to delete the logical volume store while geometry closed ! > > WARNING - Attempt to delete the solid store while geometry closed ! > > WARNING - Attempt to delete the region store while geometry closed ! > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > From: zoubair-mariam@hotmail.fr > > To: gate-users@lists.opengatecollaboration.org > > Subject: problem with voxelez the phantom and the source > > Date: Tue, 5 Mar 2013 16:21:43 +0000 > > > > Dear Gate users > > > > I try to follow all the steps to run CT scanner, I have an image of 512 x 512 pixels. I'm voxelez the phantom and the source (position = -256, -256, 0) but I have not seen any interaction and I have this message. > > > > > > Can you help me > > > > Thank you > > > > > > > > /tracking/storeTrajectory 1 > > Attributes available for modeling and filtering with > > "/vis/modeling/trajectories/create/drawByAttribute" and > > "/vis/filtering/trajectories/create/attributeFilter" commands: > > G4Trajectory: > > Charge (Ch): unit: e+ (G4double) > > Track ID (ID): G4int > > Initial kinetic energy (IKE): G4BestUnit (G4double) > > Initial momentum magnitude (IMag): G4BestUnit (G4double) > > Initial momentum (IMom): G4BestUnit (G4ThreeVector) > > No. of points (NTP): G4int > > > > > > PDG Encoding (PDG): G4int > > Parent ID (PID): G4int > > Particle Name (PN): G4String > > G4TrajectoryPoint: > > Position (Pos): G4BestUnit (G4ThreeVector) > > WARNING: Trajectory storing has been requested. This action may be > > reversed with "/tracking/storeTrajectory 0". > > WARNING: The vis manager will keep up to 100 events. > > This may use a lot of memory. > > It may be changed with, e.g., "/vis/scene/endOfEventAction accumulate 10". > > CREATED THE COMMAND /gate/systems/cylindricalPET/addAnewRsector > > Call VoxelParameterized::InsertReader > > Range Translator > > Range 0 : imageValue in [ 0.000e+00 , 1.500e+03 ] ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01) > > Range 1 : imageValue in [ 1.501e+03 , 2.250e+03 ] ---> material Water, visibility 1, coulour (1.000e+00,0.000e+00,0.000e+00,2.000e-01) > > Range 2 : imageValue in [ 2.251e+03 , 2.750e+03 ] ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01) > > Range 3 : imageValue in [ 2.751e+03 , 3.848e+03 ] ---> material RibBone, visibility 1, coulour (0.000e+00,0.000e+00,1.000e+00,2.000e-01) > > ', assuming default BIGENDIAN'LITTLEENDIAN > > > > 'nrecognised type name 'unsigned integer > > Header read from 'CT-IM00120_uint16.h33' > > 'Data file name 'm001-IM00120.i33 > > Nb of planes: 1 > > Nb of pixels per plane: 512 512 > > Pixel size: 4.590e-01 4.590e-01 > > Slice thickness: 2.179e+00 > > Matrix size: 2.350e+02 2.350e+02 > > Data type: > > Data byte order: BIGENDIAN > > > > > > '!ror: Could not open header file 'm001-IM00120.i33 > > <!> *** WARNING *** <!> Unknown process: PositronAnnihilationStd > > <!> *** WARNING *** <!> Unknown process: MultipleScattering > > <!> *** WARNING *** <!> Unknown process: MultipleScattering > > > > > > > > List of Enabled processes: > > > > > > === Process: PhotoElectric === > > Particle: gamma > > * Model(s): > > - StandardModel > > > > === Process: Compton === > > Particle: gamma > > * Model(s): > > - StandardModel > > > > === Process: Bremsstrahlung === > > Particle: e+ > > * Model(s): > > - StandardModel > > Particle: e- > > * Model(s): > > - StandardModel > > > > === Process: ElectronIonisation === > > Particle: e+ > > * Model(s): > > - StandardModel > > Particle: e- > > * Model(s): > > - StandardModel > > > > List of initialized processes: > > > > [Core-0] Initialization of geometry > > G4PhysicalVolumeModel::Validate(): A volume of the same name and > > copy number ("world_phys", copy 0) still exists and is being used. > > But it is not the same volume you originally specified > > in /vis/scene/add/. > > [Core-0] Initialization of physics > > [Core-0] Initialization of actors > > > > GATE object: 'systems/cylindricalPET' > > > > Components: > > > > GATE object: 'systems/cylindricalPET/base' > > Attached to volume: cylindricalPET > > Nb of children: 1 > > > > GATE object: 'systems/cylindricalPET/rsector' > > Attached to volume: head > > Nb of children: 1 > > > > GATE object: 'systems/cylindricalPET/module' > > Attached to volume: --- > > Nb of children: 1 > > > > GATE object: 'systems/cylindricalPET/submodule' > > Attached to volume: block > > Nb of children: 1 > > > > GATE object: 'systems/cylindricalPET/crystal' > > Attached to volume: crystal > > Nb of children: 4 > > > > GATE object: 'systems/cylindricalPET/layer0' > > Attached to volume: LYSO > > Nb of children: 0 > > > > GATE object: 'systems/cylindricalPET/layer1' > > Attached to volume: LSO > > Nb of children: 0 > > > > GATE object: 'systems/cylindricalPET/layer2' > > Attached to volume: --- > > Nb of children: 0 > > > > GATE object: 'systems/cylindricalPET/layer3' > > Attached to volume: --- > > Nb of children: 0 > > geometrical design type: 1 > > ring diameter: -1.750e+01 cm > > rsector axial pitch: 0.000e+00 fm > > rsector azimuthal pitch: -4.500e+01 degree > > rsector tangential size: 2.000e+00 cm > > rsector axial size: 2.530e+01 cm > > module axial size: 2.530e+01 cm > > module tangential size: 2.000e+00 cm > > module axial pitch: 0.000e+00 fm > > module tangential pitch: 0.000e+00 fm > > submodule axial size: 1.900e+00 cm > > submodule tangential size: 2.000e+00 cm > > submodule axial pitch: 1.950e+00 cm > > submodule tangential pitch: 0.000e+00 fm > > crystal radial size: 2.200e+00 mm > > crystal axial size: 2.200e+00 mm > > crystal tangential size: 2.000e+00 cm > > crystal axial pitch: 2.400e+00 mm > > crystal tangential pitch: 0.000e+00 fm > > layer0 radial size: 2.200e+00 mm > > in layer0 interaction length: 1.100e+00 mm > > layer1 radial size: 2.200e+00 mm > > in layer1 interaction length: 1.100e+00 mm > > Axial nb of rsectors: 1 > > Azimuthal nb of rsectors: 8 > > Axial nb of modules: 1 > > Tangential nb of modules: 1 > > Axial nb of submodules: 13 > > Tangential nb of submodules: 1 > > Axial nb of crystals: 8 > > Tangential nb of crystals: 1 > > Radial nb of layers: 2 > > Range Translator > > Range 0 : imageValue in [ 0.000e+00 , 1.500e+03 ] ---> activity (Bq) 0.000e+00 > > Range 1 : imageValue in [ 1.501e+03 , 2.250e+03 ] ---> activity (Bq) 1.000e+01 > > Range 2 : imageValue in [ 2.251e+03 , 2.750e+03 ] ---> activity (Bq) 2.000e+01 > > Range 3 : imageValue in [ 2.751e+03 , 3.848e+03 ] ---> activity (Bq) 3.000e+01 > > GateSourceVoxelImageReader::ReadFile : fileName: CT-IM00120_uint16.h33 > > ', assuming default BIGENDIAN'LITTLEENDIAN > > > > 'nrecognised type name 'unsigned integer > > Header read from 'CT-IM00120_uint16.h33' > > 'Data file name 'm001-IM00120.i33 > > Nb of planes: 1 > > Nb of pixels per plane: 512 512 > > Pixel size: 4.590e-01 4.590e-01 > > Slice thickness: 2.179e+00 > > Matrix size: 2.350e+02 2.350e+02 > > Data type: > > Data byte order: BIGENDIAN > > > > > > '!ror: Could not open header file 'm001-IM00120.i33 > > **** Error: Volume does not exist **** > > Ignoring confine condition > > Source ---------------> voxel_brain > > ID : 0 > > type : backtoback > > startTime (s) : 0.000e+00 > > time (s) : 0.000e+00 > > forcedUnstable : 0 > > verboseLevel : 0 > > ----------------------- > > Voxel reader ----------> number of voxels : 0 > > total activity (Bq) : 0.000e+00 > > position (mm) : 0.000e+00 0.000e+00 0.000e+00 > > voxel size (mm) : 1.000e+00 1.000e+00 1.000e+00 > > Source --------------> voxel_brain > > ID : 0 > > type : backtoback > > activity (Bq) : 0.000e+00 > > startTime (s) : 0.000e+00 > > time (s) : 0.000e+00 > > forcedUnstable : 0 > > forcedHalfLife (s) : -6.931e-01 > > verboseLevel : 0 > > relative to vol : World > > ---------------------- > > > > GPS info ----------------> > > particle : gamma > > SourcePosType : Point > > Shape : NULL > > halfx,halfy,halfz (mm) : 0.000e+00 0.000e+00 0.000e+00 > > Radius (mm) : 0.000e+00 > > CentreCoords (mm) : 0.000e+00 0.000e+00 0.000e+00 > > EnergyDisType : Mono > > AngleDisType : iso > > MinTheta, MaxTheta (deg) : 0.000e+00 1.800e+02 > > MinPhi, MaxPhi (deg) : 0.000e+00 3.600e+02 > > -------------------------- > > > > GateSourceMgr::ListSources: List of the sources in the source manager > > Source ---------------> voxel_brain > > ID : 0 > > type : backtoback > > startTime (s) : 0.000e+00 > > time (s) : 0.000e+00 > > forcedUnstable : 0 > > > > verboseLevel : 0 > > ----------------------- > > ***** COMMAND NOT FOUND </gate/output/root/setRootdelayFlag 1> ***** > > > > ***** Batch is interrupted!! ***** > > [Acquisition-0] > > [Acquisition-0] ============= Source initialization ============= > > [Acquisition-0] > > [Acquisition-0] ============= Acquisition starts! ============= > > [Acquisition-0] Simulation start time = 0 sec > > [Acquisition-0] Simulation end time = 2.5 sec > > [Acquisition-0] Simulation will have = 1 run(s) > > [Acquisition-0] > > [Acquisition-0] Slice 0 from 0 to 2.5 s [slice=2.5 s], final stop at 2.5 s. > > > > PhotoElectric: for gamma SubType= 12 > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > PhotoElectric : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV > > > > Compton: for gamma SubType= 13 > > Lambda tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins, spline: 1 > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > Klein-Nishina : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV > > > > Bremsstrahlung: for e- SubType= 3 > > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins > > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1 > > LPM flag: 1 for E > 1.000e+00 GeV > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > eBremSB : Emin= 0.000e+00 eV Emax= 1.000e+00 GeV AngularGenUrban > > eBremLPM : Emin= 1.000e+00 GeV Emax= 1.000e+01 TeV AngularGenUrban > > > > ElectronIonisation: for e- SubType= 2 > > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins > > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1 > > finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02 > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > MollerBhabha : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV > > > > Bremsstrahlung: for e+ SubType= 3 > > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins > > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1 > > LPM flag: 1 for E > 1.000e+00 GeV > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > eBremSB : Emin= 0.000e+00 eV Emax= 1.000e+00 GeV AngularGenUrban > > eBremLPM : Emin= 1.000e+00 GeV Emax= 1.000e+01 TeV AngularGenUrban > > > > ElectronIonisation: for e+ SubType= 2 > > dE/dx and range tables from 1.000e+02 eV to 1.000e+01 TeV in 77 bins > > Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1 > > finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02 > > ===== EM models for the G4Region DefaultRegionForTheWorld ====== > > MollerBhabha : Emin= 0.000e+00 eV Emax= 1.000e+01 TeV > > 1 event has been kept for refreshing and/or reviewing. > > User simulation time (sec) := 4.900e-01 > > Real simulation time (sec) := 2.860e+00 > > System simulation time (sec) := 6.000e-02 > > [Core-0] End of macro hrrt.mac > > GateOutputMgr deleting... > > Graphics systems deleted. > > Visualization Manager deleting... > > WARNING - Attempt to delete the physical volume store while geometry closed ! > > WARNING - Attempt to delete the logical volume store while geometry closed ! > > WARNING - Attempt to delete the solid store while geometry closed ! > > WARNING - Attempt to delete the region store while geometry closed ! > > > > > > > > > > _______________________________________________ > > Gate-users mailing list > > Gate-users@lists.opengatecollaboration.org > > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users > > > > > ------------------------------ > > _______________________________________________ > Gate-users mailing list > Gate-users@lists.opengatecollaboration.org > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users > > End of Gate-users Digest, Vol 82, Issue 6 > ***************************************** </div></div> </div></body> </html>