[Gate-users] GATE on a linux cluster

[Samuel BURG]

Hi,

you first need to setup a cluster (single-cpu / multi-core / multi-thread).
With Ubuntu you can use "Condor", it is pre-packed for the distrib:

sudo apt-get install condor

then, you have to learn how this cluster software work to be able to submit "cluster".

You will be short in Ram, 4Gb for 16 threads isn't very large.
It will work for analytical simulations, but large voxelized sources/phantoms won't work.


best regards,
 
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Samuel Burg
Mail : <samuel_burg at yahoo.fr>
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"People don't learn if they never make any mistakes.
You have to let people screw up so they can learn and grow."

-- Raymond Chen --

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________________________________
 De : 刘斌信件 <golder_time at 163.com>
À : gate-users at lists.opengatecollaboration.org 
Envoyé le : Vendredi 14 juin 2013 12h12
Objet : [Gate-users] GATE on a linux cluster
 

Hi Fernando,

I am looking for some advice on installation of GATE on a linux cluster.

My workstation computer configuration are that Inter(R) Xeon(R) CPU E5-2643 at 3.30 GHz×16, 4GB RAM, 1TGB HD.  I have previously installed

GATE on  a 2 CPU machine running Ubuntu.  However, I didn’t use cluster ever. Now my high-performance computer only run on 1 CPU.  Someone here had reported that GATE is a single-thread application so that's not possible.

However, recently I have known that  GATE  can run in parallel mode  on multiple CPUs by using gjs and gjm.  Some helpful links or advice to help me set up my installation!

Bin
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