[Gate-users] Corrigendum: My mistake in pprevious messaga: Problem running GATE and ROOT with regularMatrix argument

Simon Stute gate.stute at gmail.com
Mon Aug 23 14:53:30 CEST 2010


On Mon, Aug 23, 2010 at 8:51 AM, shahrokh nasseri <
shahrokh.nasseri at gmail.com> wrote:

> Thank you for your help very much. I have another question.
>
> There is a perception (with me at least) that the "compressedMatrix" option
> is led to displace voxels in the geometric structure of voxellized phantom.
> Perhaps this does not happen to use "regularMatrix" option. However, I
> think that "compressedMatrix" has performed more quickly from "
> regularMatrix".
>

In some cases if you have big blocks of voxels with the same properties,
compressed should be faster but it is strange ...
Maybe if your results are using visualization, regular is slower in
computing the voxels visualization properties ...


> As I mentioned in the previous message, in using "compressedMatrix" option,
> it ‎mismatches between voxellized source and voxellized phantom in the
> spatial coordinates.
>
> Is it true that "regularMatrix" option is initialized the geometric
> structure of voxellized phantom better or more precise than "compressedMatrix"
> option?
>

No, normally they are equal ! just that regular is supposed to be faster
than compressed (but I talk without visualization of course).

Cheers,
Simon


> Your sincerely
> Shahrokh
>
>
> On Sun, Aug 22, 2010 at 1:37 PM, Simon Stute <gate.stute at gmail.com> wrote:
>
>> Then if you need visualization, no matter whether you use compressed or
>> regular.
>> When you'll finish debugging your simulation, just disable the visu and
>> switch to regular.
>>
>> On Sun, Aug 22, 2010 at 7:38 PM, shahrokh nasseri <
>> shahrokh.nasseri at gmail.com> wrote:
>>
>>> Hi,
>>>
>>> I must correct my mistake. After I used "regularMatrix" argument in my
>>> macro file as mentioned in the following commands, I get ‎the error
>>> messages mentioned in previous above. But when I used
>>> "compressedMatrix" ‎argument, I do not get any error or warning
>>> message.‎
>>>
>>> ‎/gate/world/daughters/name jaszcak_phantom‎
>>> ‎/gate/world/daughters/insert regularMatrix
>>> ‎#‎
>>> ‎/gate/jaszcak_phantom/geometry/insertReader interfile
>>> ‎/gate/jaszcak_phantom/interfileReader/insertTranslator range‎
>>> ‎/gate/jaszcak_phantom/interfileReader/rangeTranslator/readTable
>>> ‎range.dat
>>> ‎/gate/jaszcak_phantom/interfileReader/rangeTranslator/describe 1‎
>>> ‎/gate/jaszcak_phantom/interfileReader/readFile rods.h33‎
>>> ‎#‎
>>> ‎# off center Y-axis is +0 cm
>>> ‎/gate/jaszcak_phantom/placement/setTranslation 0 0 0 cm‎
>>> ‎/gate/jaszcak_phantom/placement/setRotationAxis 0 1 0‎
>>> ‎/gate/jaszcak_phantom/placement/setRotationAngle 180 deg‎
>>> ‎ ‎
>>> Please guide me,‎
>>> Shahrokh
>>>
>>>
>


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