[Gate-users] solved. RE: Link problem in compiling Gate5-p01

[C C]

Thanks for Ida's suggestion. There must something messed up so that some classes were not compiled and therefore the lib file did not appear. So I just erased the whole gate directory and started over. everything worked fine.

Date: Thu, 8 Oct 2009 08:28:07 +0200
Subject: Re: [Gate-users] Link problem in compiling Gate5-p01
From: ida.haggstrom at radfys.umu.se
To: phasenew at hotmail.com

Dear Congwu,

I'm not sure, but I think you need to specify the path to your compiled files. During compilation, all your .o-files (e.g. GateTokenzier.o that was your first undefined reference) end up in the directory "gate_v5.0.0.0/tmp/Linux-g++/Gate". During linking it has to find these files, so you need to add that path to, I think, LD_LIBRARY_PATH (correct me if I'm wrong anyone!). You have to do that prior to typing make. Do set the path, type (at least for centOS, dunno for Suse)



export LD_LIBRARY_PATH=<yourPathToGate>/gate_v5.0.0.0/tmp/Linux-g++/Gate:$LD_LIBRARY_PATH

alternatively you can use the "setenv" command I think, if you don't use "export" in Suse.



Good luck!
Ida


2009/10/7 C C <phasenew at hotmail.com>







Hi, everyone, I have problems of compiling the gate5.
the OS is Suse. It seems the compilation is not a problem. But just cannot link. In the screen output there are a lot of "undefinded reference" error. Below is part of the message. Can anybody give a hint what may be the problem. Thanks a lot.



Congwu

..........
GateMDBFieldDecoder.cc:(.text+0x1843): undefined reference to `GateTokenizer::CleanUpString(G4String&)'
GateMDBFieldDecoder.cc:(.text+0x1857): undefined reference to `GateTokenizer::BreakString(G4String const&, char)'


GateMDBFieldDecoder.cc:(.text+0x1881): undefined reference to `GateTokenizer::CleanUpString(G4String&)'
./tmp/Linux-g++/Gate/libGate.a(GateMDBFieldDecoder.o): In function `GateMDBFieldDecoder::DecodeNumericField(G4String const&, G4String, G4String const&, GateMap<G4String, int>&, GateMap<G4String, double>&)':


GateMDBFieldDecoder.cc:(.text+0x254e): undefined reference to `GateTokenizer::CleanUpString(G4String&)'
GateMDBFieldDecoder.cc:(.text+0x2648): undefined reference to `GateTokenizer::CleanUpString(G4String&)'


./tmp/Linux-g++/Gate/libGate.a(GateMDBFieldDecoder.o): In function `GateMDBFieldDecoder::DecodeTextField(G4String const&, G4String, G4String const&, GateMap<G4String, int>&)':
GateMDBFieldDecoder.cc:(.text+0x2bce): undefined reference to `GateTokenizer::CleanUpString(G4String&)'


GateMDBFieldDecoder.cc:(.text+0x2cc5): undefined reference to `GateTokenizer::CleanUpString(G4String&)'
./tmp/Linux-g++/Gate/libGate.a(GateMDBFieldDecoder.o):GateMDBFieldDecoder.cc:(.text+0x2f8a): more undefined references to `GateTokenizer::CleanUpString(G4String&)' follow


./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':
GateCompressedVoxelOutputMessenger.cc:(.text+0x5b): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'


GateCompressedVoxelOutputMessenger.cc:(.text+0x7c): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':


GateCompressedVoxelOutputMessenger.cc:(.text+0xd4): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':


GateCompressedVoxelOutputMessenger.cc:(.text+0x124): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::SetNewValue(G4UIcommand*, G4String)':


GateCompressedVoxelOutputMessenger.cc:(.text+0x31f): undefined reference to `GateOutputModuleMessenger::SetNewValue(G4UIcommand*, G4String)'
./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::GateCompressedVoxelOutputMessenger(GateCompressedVoxelOutput*)':


GateCompressedVoxelOutputMessenger.cc:(.text+0x490): undefined reference to `GateOutputModuleMessenger::GateOutputModuleMessenger(GateVOutputModule*)'
GateCompressedVoxelOutputMessenger.cc:(.text+0x73b): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'


./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::GateCompressedVoxelOutputMessenger(GateCompressedVoxelOutput*)':
GateCompressedVoxelOutputMessenger.cc:(.text+0x960): undefined reference to `GateOutputModuleMessenger::GateOutputModuleMessenger(GateVOutputModule*)'


GateCompressedVoxelOutputMessenger.cc:(.text+0xc0b): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':


GateCompressedVoxelOutputMessenger.cc:(.text+0xc9): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()':


GateCompressedVoxelOutputMessenger.cc:(.text+0x119): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()'
./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):(.rodata._ZTI34GateCompressedVoxelOutputMessenger[typeinfo for GateCompressedVoxelOutputMessenger]+0x10): undefined reference to `typeinfo for GateOutputModuleMessenger'


./tmp/Linux-g++/Gate/libGate.a(GateFictitiousVoxelMapInserter.o): In function `GateFictitiousVoxelMapInserter::AddOutput(G4String)':
GateFictitiousVoxelMapInserter.cc:(.text+0xb36): undefined reference to `GateOutputMgr::instance'


GateFictitiousVoxelMapInserter.cc:(.text+0xb48): undefined reference to `GateOutputMgr::instance'
GateFictitiousVoxelMapInserter.cc:(.text+0xb54): undefined reference to `GateOutputMgr::m_digiMode'
GateFictitiousVoxelMapInserter.cc:(.text+0xb86): undefined reference to `GateOutputMgr::AddOutputModule(GateVOutputModule*)'


GateFictitiousVoxelMapInserter.cc:(.text+0xbfe): undefined reference to `GateOutputMgr::GateOutputMgr(G4String)'
GateFictitiousVoxelMapInserter.cc:(.text+0xc05): undefined reference to `GateOutputMgr::instance'


collect2: ld returned 1 exit status
make: *** [bin/Linux-g++/Gate] Error 1

 		 	   		  
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