<html> <head> <style></style> </head> <body class='hmmessage'> Thanks for Ida's suggestion. There must something messed up so that some classes were not compiled and therefore the lib file did not appear. So I just erased the whole gate directory and started over. everything worked fine. <hr id="stopSpelling">Date: Thu, 8 Oct 2009 08:28:07 +0200 Subject: Re: [Gate-users] Link problem in compiling Gate5-p01 From: ida.haggstrom@radfys.umu.se To: phasenew@hotmail.com Dear Congwu, I'm not sure, but I think you need to specify the path to your compiled files. During compilation, all your .o-files (e.g. GateTokenzier.o that was your first undefined reference) end up in the directory "gate_v5.0.0.0/tmp/Linux-g++/Gate". During linking it has to find these files, so you need to add that path to, I think, LD_LIBRARY_PATH (correct me if I'm wrong anyone!). You have to do that prior to typing make. Do set the path, type (at least for centOS, dunno for Suse) export LD_LIBRARY_PATH=<yourPathToGate>/gate_v5.0.0.0/tmp/Linux-g++/Gate:$LD_LIBRARY_PATH alternatively you can use the "setenv" command I think, if you don't use "export" in Suse. Good luck! Ida <div class="ecxgmail_quote">2009/10/7 C C <<a href="mailto:phasenew@hotmail.com">phasenew@hotmail.com</a>> <blockquote class="ecxgmail_quote" style="padding-left: 1ex;"> <div> Hi, everyone, I have problems of compiling the gate5. the OS is Suse. It seems the compilation is not a problem. But just cannot link. In the screen output there are a lot of "undefinded reference" error. Below is part of the message. Can anybody give a hint what may be the problem. Thanks a lot. Congwu .......... GateMDBFieldDecoder.cc:(.text+0x1843): undefined reference to `GateTokenizer::CleanUpString(G4String&)' GateMDBFieldDecoder.cc:(.text+0x1857): undefined reference to `GateTokenizer::BreakString(G4String const&, char)' GateMDBFieldDecoder.cc:(.text+0x1881): undefined reference to `GateTokenizer::CleanUpString(G4String&)' ./tmp/Linux-g++/Gate/libGate.a(GateMDBFieldDecoder.o): In function `GateMDBFieldDecoder::DecodeNumericField(G4String const&, G4String, G4String const&, GateMap<G4String, int>&, GateMap<G4String, double>&)': GateMDBFieldDecoder.cc:(.text+0x254e): undefined reference to `GateTokenizer::CleanUpString(G4String&)' GateMDBFieldDecoder.cc:(.text+0x2648): undefined reference to `GateTokenizer::CleanUpString(G4String&)' ./tmp/Linux-g++/Gate/libGate.a(GateMDBFieldDecoder.o): In function `GateMDBFieldDecoder::DecodeTextField(G4String const&, G4String, G4String const&, GateMap<G4String, int>&)': GateMDBFieldDecoder.cc:(.text+0x2bce): undefined reference to `GateTokenizer::CleanUpString(G4String&)' GateMDBFieldDecoder.cc:(.text+0x2cc5): undefined reference to `GateTokenizer::CleanUpString(G4String&)' ./tmp/Linux-g++/Gate/libGate.a(GateMDBFieldDecoder.o):GateMDBFieldDecoder.cc:(.text+0x2f8a): more undefined references to `GateTokenizer::CleanUpString(G4String&)' follow ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()': GateCompressedVoxelOutputMessenger.cc:(.text+0x5b): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()' GateCompressedVoxelOutputMessenger.cc:(.text+0x7c): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()': GateCompressedVoxelOutputMessenger.cc:(.text+0xd4): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()': GateCompressedVoxelOutputMessenger.cc:(.text+0x124): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::SetNewValue(G4UIcommand*, G4String)': GateCompressedVoxelOutputMessenger.cc:(.text+0x31f): undefined reference to `GateOutputModuleMessenger::SetNewValue(G4UIcommand*, G4String)' ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::GateCompressedVoxelOutputMessenger(GateCompressedVoxelOutput*)': GateCompressedVoxelOutputMessenger.cc:(.text+0x490): undefined reference to `GateOutputModuleMessenger::GateOutputModuleMessenger(GateVOutputModule*)' GateCompressedVoxelOutputMessenger.cc:(.text+0x73b): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::GateCompressedVoxelOutputMessenger(GateCompressedVoxelOutput*)': GateCompressedVoxelOutputMessenger.cc:(.text+0x960): undefined reference to `GateOutputModuleMessenger::GateOutputModuleMessenger(GateVOutputModule*)' GateCompressedVoxelOutputMessenger.cc:(.text+0xc0b): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()': GateCompressedVoxelOutputMessenger.cc:(.text+0xc9): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o): In function `GateCompressedVoxelOutputMessenger::~GateCompressedVoxelOutputMessenger()': GateCompressedVoxelOutputMessenger.cc:(.text+0x119): undefined reference to `GateOutputModuleMessenger::~GateOutputModuleMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateCompressedVoxelOutputMessenger.o):(.rodata._ZTI34GateCompressedVoxelOutputMessenger[typeinfo for GateCompressedVoxelOutputMessenger]+0x10): undefined reference to `typeinfo for GateOutputModuleMessenger' ./tmp/Linux-g++/Gate/libGate.a(GateFictitiousVoxelMapInserter.o): In function `GateFictitiousVoxelMapInserter::AddOutput(G4String)': GateFictitiousVoxelMapInserter.cc:(.text+0xb36): undefined reference to `GateOutputMgr::instance' GateFictitiousVoxelMapInserter.cc:(.text+0xb48): undefined reference to `GateOutputMgr::instance' GateFictitiousVoxelMapInserter.cc:(.text+0xb54): undefined reference to `GateOutputMgr::m_digiMode' GateFictitiousVoxelMapInserter.cc:(.text+0xb86): undefined reference to `GateOutputMgr::AddOutputModule(GateVOutputModule*)' GateFictitiousVoxelMapInserter.cc:(.text+0xbfe): undefined reference to `GateOutputMgr::GateOutputMgr(G4String)' GateFictitiousVoxelMapInserter.cc:(.text+0xc05): undefined reference to `GateOutputMgr::instance' collect2: ld returned 1 exit status make: *** [bin/Linux-g++/Gate] Error 1 <div> <hr>Hotmail: Powerful Free email with security by Microsoft. <a href="http://clk.atdmt.com/GBL/go/171222986/direct/01/">Get it now.</a></div> </div> _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.healthgrid.org">Gate-users@lists.healthgrid.org</a> <a href="http://lists.healthgrid.org/mailman/listinfo/gate-users">http://lists.healthgrid.org/mailman/listinfo/gate-users</a> </blockquote></div> <hr />Hotmail: Trusted email with powerful SPAM protection. <a href='http://clk.atdmt.com/GBL/go/177141665/direct/01/' target='_new'>Sign up now.</a></body> </html>