[Gate-users] Re: Gate-users Digest, Vol 24, Issue 31
José Ramos
joserm84 at gmail.com
Sat May 24 17:51:21 CEST 2008
Hi Sonal
I had a similar problem, I solved it, "reinstalling root" and recompile
Gate
I hope this help
Best regards
2008/5/24 <gate-users-request at lists.healthgrid.org>:
> Send Gate-users mailing list submissions to
> gate-users at lists.healthgrid.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
> http://lists.healthgrid.org/mailman/listinfo/gate-users
> or, via email, send a message with subject or body 'help' to
> gate-users-request at lists.healthgrid.org
>
> You can reach the person managing the list at
> gate-users-owner at lists.healthgrid.org
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Gate-users digest..."
>
>
> Today's Topics:
>
> 1. Gate digitizer error (Sonal Ambwani)
> 2. Re: Gate digitizer error (Sonal Ambwani)
> 3. Re: Gate digitizer error---update (Sonal Ambwani)
> 4. Re: Transmission tomography (Javier Serrano)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 23 May 2008 12:04:26 -0400
> From: Sonal Ambwani <ambwani at bu.edu>
> Subject: [Gate-users] Gate digitizer error
> To: gate-users at lists.healthgrid.org
> Message-ID: <20080523120426.q8daye1hws4k4ckw at www.bu.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format="flowed"
>
> Dear Gate-users,
>
> I am suddenly getting the following error while running benchmarkSPECT :
>
> /gate/physics/setXRayCut 200. keV
> /gate/physics/setElectronCut 1. km
> /gate/physics/setDeltaRayCut 1. GeV
> /run/initialize
> WARNING !
> SetCutValueForOthers became obsolete.
> It is harmless to remove this invokation without any side effects.
> This dummy method implementation will be removed soon.
> /gate/digitizer/Singles/insert adder
> ***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
>
> ***** Batch is interupted!! *****
> Idle>
>
> Can someone please point out what might be wrong. This was working till
> a few days ago.
>
> Sonal Ambwani
>
> Dept. of Electrical and Computer Engineering
> Boston University
>
>
>
> ------------------------------
>
> Message: 2
> Date: Fri, 23 May 2008 12:34:14 -0400
> From: Sonal Ambwani <ambwani at bu.edu>
> Subject: Re: [Gate-users] Gate digitizer error
> To: gate-users at lists.healthgrid.org
> Message-ID: <20080523123414.rtnx27xw0c04sog0 at www.bu.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format="flowed"
>
> Hi again,
>
> I am getting the same error for benchmarkPET. I guess it might help to
> mention the macro here:
>
> ###GATE : benchmarkPET.mac
> /gate/world/geometry/setXLength 150. cm
> /gate/world/geometry/setYLength 150. cm
> /gate/world/geometry/setZLength 150. cm
>
> /control/execute camera.mac
>
> /control/execute phantom.mac
>
> /control/execute physics.mac
>
> # I N I T I A L I Z E
> /gate/systems/cylindricalPET/verbose 0
> /gate/geometry/enableAutoUpdate
> /run/initialize
>
>
> /gate/digitizer/Singles/insert adder
> /gate/digitizer/Singles/insert readout
> /gate/digitizer/Singles/readout/setDepth 1
> /gate/digitizer/Singles/insert blurring
> /gate/digitizer/Singles/blurring/setResolution 0.26
> /gate/digitizer/Singles/blurring/setEnergyOfReference 511. keV
> /gate/digitizer/Singles/insert thresholder
> /gate/digitizer/Singles/thresholder/setThreshold 350. keV
> /gate/digitizer/Singles/insert upholder
> /gate/digitizer/Singles/upholder/setUphold 650. keV
>
>
>
> # C O I N C I S O R T E R
> /gate/digitizer/Coincidences/setWindow 120. ns
> /gate/digitizer/Coincidences/MultiplesPolicy takeWinnerOfGoods
>
> /gate/digitizer/name delay
> /gate/digitizer/insert coincidenceSorter
> /gate/digitizer/delay/setWindow 120. ns
> /gate/digitizer/delay/setOffset 500. ns
> /gate/digitizer/delay/MultiplesPolicy takeWinnerOfGoods
>
> /control/verbose 0
> /grdm/verbose 0
> /run/verbose 0
> /event/verbose 0
> /tracking/verbose 0
> /gate/application/verbose 0
> /gate/generator/verbose 0
> /gate/stacking/verbose 0
> /gate/event/verbose 0
> /gate/source/verbose 0
>
> /control/execute sources.mac
>
> # O U T P U T
>
> /gate/output/verbose 0
>
>
> /gate/output/ascii/setOutFileHitsFlag 1
> /gate/output/ascii/setOutFileSinglesFlag 1
> /gate/output/ascii/setOutFileCoincidencesFlag 1
> /gate/output/ascii/setOutFiledelayFlag 1
>
> /gate/output/root/setFileName benchmarkPET
> /gate/output/root/setRootHitFlag 0
> /gate/output/root/setRootSinglesFlag 0
> /gate/output/root/setRootCoincidencesFlag 1
> /gate/output/root/setRootdelayFlag 1
> /gate/output/root/setRootNtupleFlag 0
> /gate/output/root/setSaveRndmFlag 0
>
>
> # S T A R T
> /gate/application/setTimeSlice 120. s
> /gate/application/setTimeStart 0. s
> /gate/application/setTimeStop 240. s
> /gate/application/startDAQ
>
>
>
> Quoting Sonal Ambwani <ambwani at bu.edu>:
>
> > Dear Gate-users,
> >
> > I am suddenly getting the following error while running benchmarkSPECT :
> >
> > /gate/physics/setXRayCut 200. keV
> > /gate/physics/setElectronCut 1. km
> > /gate/physics/setDeltaRayCut 1. GeV
> > /run/initialize
> > WARNING !
> > SetCutValueForOthers became obsolete.
> > It is harmless to remove this invokation without any side effects.
> > This dummy method implementation will be removed soon.
> > /gate/digitizer/Singles/insert adder
> > ***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
> >
> > ***** Batch is interupted!! *****
> > Idle>
> >
> > Can someone please point out what might be wrong. This was working till
> > a few days ago.
> >
> > Sonal Ambwani
> >
> > Dept. of Electrical and Computer Engineering
> > Boston University
> >
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.healthgrid.org
> > http://lists.healthgrid.org/mailman/listinfo/gate-users
> >
>
>
>
> Sonal Ambwani
>
> Dept. of Electrical and Computer Engineering
> Boston University
>
>
>
> ------------------------------
>
> Message: 3
> Date: Fri, 23 May 2008 13:53:17 -0400
> From: Sonal Ambwani <ambwani at bu.edu>
> Subject: Re: [Gate-users] Gate digitizer error---update
> To: gate-users at lists.healthgrid.org
> Message-ID: <20080523135317.uly9soqzc4c8s840 at www.bu.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format="flowed"
>
> benchmarkPET.mac works after disabling the root output completely.
> Please help!
>
>
> Quoting Sonal Ambwani <ambwani at bu.edu>:
>
> > Hi again,
> >
> > I am getting the same error for benchmarkPET. I guess it might help to
> > mention the macro here:
> >
> > ###GATE : benchmarkPET.mac
> > /gate/world/geometry/setXLength 150. cm
> > /gate/world/geometry/setYLength 150. cm
> > /gate/world/geometry/setZLength 150. cm
> >
> > /control/execute camera.mac
> >
> > /control/execute phantom.mac
> >
> > /control/execute physics.mac
> >
> > # I N I T I A L I Z E
> > /gate/systems/cylindricalPET/verbose 0
> > /gate/geometry/enableAutoUpdate
> > /run/initialize
> >
> >
> > /gate/digitizer/Singles/insert adder
> > /gate/digitizer/Singles/insert readout
> > /gate/digitizer/Singles/readout/setDepth 1
> > /gate/digitizer/Singles/insert blurring
> > /gate/digitizer/Singles/blurring/setResolution 0.26
> > /gate/digitizer/Singles/blurring/setEnergyOfReference 511. keV
> > /gate/digitizer/Singles/insert thresholder
> > /gate/digitizer/Singles/thresholder/setThreshold 350. keV
> > /gate/digitizer/Singles/insert upholder
> > /gate/digitizer/Singles/upholder/setUphold 650. keV
> >
> >
> >
> > # C O I N C I S O R T E R
> > /gate/digitizer/Coincidences/setWindow 120. ns
> > /gate/digitizer/Coincidences/MultiplesPolicy takeWinnerOfGoods
> >
> > /gate/digitizer/name delay
> > /gate/digitizer/insert coincidenceSorter
> > /gate/digitizer/delay/setWindow 120. ns
> > /gate/digitizer/delay/setOffset 500. ns
> > /gate/digitizer/delay/MultiplesPolicy takeWinnerOfGoods
> >
> > /control/verbose 0
> > /grdm/verbose 0
> > /run/verbose 0
> > /event/verbose 0
> > /tracking/verbose 0
> > /gate/application/verbose 0
> > /gate/generator/verbose 0
> > /gate/stacking/verbose 0
> > /gate/event/verbose 0
> > /gate/source/verbose 0
> >
> > /control/execute sources.mac
> >
> > # O U T P U T
> >
> > /gate/output/verbose 0
> >
> >
> > /gate/output/ascii/setOutFileHitsFlag 1
> > /gate/output/ascii/setOutFileSinglesFlag 1
> > /gate/output/ascii/setOutFileCoincidencesFlag 1
> > /gate/output/ascii/setOutFiledelayFlag 1
> >
> > /gate/output/root/setFileName benchmarkPET
> > /gate/output/root/setRootHitFlag 0
> > /gate/output/root/setRootSinglesFlag 0
> > /gate/output/root/setRootCoincidencesFlag 1
> > /gate/output/root/setRootdelayFlag 1
> > /gate/output/root/setRootNtupleFlag 0
> > /gate/output/root/setSaveRndmFlag 0
> >
> >
> > # S T A R T
> > /gate/application/setTimeSlice 120. s
> > /gate/application/setTimeStart 0. s
> > /gate/application/setTimeStop 240. s
> > /gate/application/startDAQ
> >
> >
> >
> > Quoting Sonal Ambwani <ambwani at bu.edu>:
> >
> >> Dear Gate-users,
> >>
> >> I am suddenly getting the following error while running benchmarkSPECT :
> >>
> >> /gate/physics/setXRayCut 200. keV
> >> /gate/physics/setElectronCut 1. km
> >> /gate/physics/setDeltaRayCut 1. GeV
> >> /run/initialize
> >> WARNING !
> >> SetCutValueForOthers became obsolete.
> >> It is harmless to remove this invokation without any side effects.
> >> This dummy method implementation will be removed soon.
> >> /gate/digitizer/Singles/insert adder
> >> ***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
> >>
> >> ***** Batch is interupted!! *****
> >> Idle>
> >>
> >> Can someone please point out what might be wrong. This was working till
> >> a few days ago.
> >>
> >> Sonal Ambwani
> >>
> >> Dept. of Electrical and Computer Engineering
> >> Boston University
> >>
> >> _______________________________________________
> >> Gate-users mailing list
> >> Gate-users at lists.healthgrid.org
> >> http://lists.healthgrid.org/mailman/listinfo/gate-users
> >>
> >
> >
> >
> > Sonal Ambwani
> >
> > Dept. of Electrical and Computer Engineering
> > Boston University
> >
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.healthgrid.org
> > http://lists.healthgrid.org/mailman/listinfo/gate-users
> >
>
>
>
> Sonal Ambwani
>
> Dept. of Electrical and Computer Engineering
> Boston University
>
>
>
> ------------------------------
>
> Message: 4
> Date: Fri, 23 May 2008 19:51:50 +0200
> From: "Javier Serrano" <fjaviersr at usal.es>
> Subject: Re: [Gate-users] Transmission tomography
> To: gate-users at lists.healthgrid.org
> Message-ID:
> <89978e4d0805231051m2239f53ci102cb532b02309c3 at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> > Richard Taschereau wrote:
> > While it is technically possible to simulate an x-ray CT, the amount of
> photons you would need is prohibitive.
>
> Yes, I think so too. I did try to simulate this with Geant4 some time
> ago and I found this problem.
>
> > Franca Cassol-Brunner wrote:
> > this will be available in the next Gate release, where a CT system will
> be
> > added.
>
> This is very interesting for me, especially if the next release is
> coming soon. I would like to simulate a CT system with Gate even with
> a limited number of photons or projections. I will keep waiting for
> the next release.
>
> Thank you all.
> Greetings, Javi.
>
>
>
>
>
> 2008/5/22 Franca Cassol-Brunner <cassol at cppm.in2p3.fr>:
> > Javier Serrano wrote:
> >
> >> Is it possible to use Gate to simulate an x-ray scanner with an
> >> external cone-beam source?
> >
> > Hello Javier,
> >
> > this will be available in the next Gate release, where a CT system will
> be
> > added. With the present release you can simulate the cone beam source but
> > there is no adapted output for the CT images.
> >
> > Don't hesitate to contact me directly to get more details.
> >
> > Cheers
> >
> > Franca
> >
> >
> > ****************************************************
> > Dr. F. Cassol Brunner
> > CPPM/IN2P3 (CNRS) Office: 305
> > 163, Avenue de Luminy Phone : (+33) 491827248
> > 13288, Marseille Fax : (+33) 491827299
> > France
> > ****************************************************
> >
>
>
> ------------------------------
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.healthgrid.org
> http://lists.healthgrid.org/mailman/listinfo/gate-users
>
>
> End of Gate-users Digest, Vol 24, Issue 31
> ******************************************
>
--
e- + e+ -> ~~>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20080524/ea31385e/attachment.htm>
More information about the Gate-users
mailing list