[Gate-users] Re: Gate-users Digest, Vol 24, Issue 31
Sonal Ambwani
ambwani at bu.edu
Sat May 24 18:03:31 CEST 2008
Thanks Jose,
The thought of reinstalling root occured to me too. Could you tell me
which version of root you are using? I have 5.18 right now and it is
causing issues with the digitizer module it seems.
Quoting José Ramos <joserm84 at gmail.com>:
> Hi Sonal
> I had a similar problem, I solved it, "reinstalling root" and recompile
> Gate
> I hope this help
> Best regards
> 2008/5/24 <gate-users-request at lists.healthgrid.org>:
>
>> Send Gate-users mailing list submissions to
>> gate-users at lists.healthgrid.org
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>> http://lists.healthgrid.org/mailman/listinfo/gate-users
>> or, via email, send a message with subject or body 'help' to
>> gate-users-request at lists.healthgrid.org
>>
>> You can reach the person managing the list at
>> gate-users-owner at lists.healthgrid.org
>>
>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of Gate-users digest..."
>>
>>
>> Today's Topics:
>>
>> 1. Gate digitizer error (Sonal Ambwani)
>> 2. Re: Gate digitizer error (Sonal Ambwani)
>> 3. Re: Gate digitizer error---update (Sonal Ambwani)
>> 4. Re: Transmission tomography (Javier Serrano)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Fri, 23 May 2008 12:04:26 -0400
>> From: Sonal Ambwani <ambwani at bu.edu>
>> Subject: [Gate-users] Gate digitizer error
>> To: gate-users at lists.healthgrid.org
>> Message-ID: <20080523120426.q8daye1hws4k4ckw at www.bu.edu>
>> Content-Type: text/plain; charset=ISO-8859-1; format="flowed"
>>
>> Dear Gate-users,
>>
>> I am suddenly getting the following error while running benchmarkSPECT :
>>
>> /gate/physics/setXRayCut 200. keV
>> /gate/physics/setElectronCut 1. km
>> /gate/physics/setDeltaRayCut 1. GeV
>> /run/initialize
>> WARNING !
>> SetCutValueForOthers became obsolete.
>> It is harmless to remove this invokation without any side effects.
>> This dummy method implementation will be removed soon.
>> /gate/digitizer/Singles/insert adder
>> ***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
>>
>> ***** Batch is interupted!! *****
>> Idle>
>>
>> Can someone please point out what might be wrong. This was working till
>> a few days ago.
>>
>> Sonal Ambwani
>>
>> Dept. of Electrical and Computer Engineering
>> Boston University
>>
>>
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Fri, 23 May 2008 12:34:14 -0400
>> From: Sonal Ambwani <ambwani at bu.edu>
>> Subject: Re: [Gate-users] Gate digitizer error
>> To: gate-users at lists.healthgrid.org
>> Message-ID: <20080523123414.rtnx27xw0c04sog0 at www.bu.edu>
>> Content-Type: text/plain; charset=ISO-8859-1; format="flowed"
>>
>> Hi again,
>>
>> I am getting the same error for benchmarkPET. I guess it might help to
>> mention the macro here:
>>
>> ###GATE : benchmarkPET.mac
>> /gate/world/geometry/setXLength 150. cm
>> /gate/world/geometry/setYLength 150. cm
>> /gate/world/geometry/setZLength 150. cm
>>
>> /control/execute camera.mac
>>
>> /control/execute phantom.mac
>>
>> /control/execute physics.mac
>>
>> # I N I T I A L I Z E
>> /gate/systems/cylindricalPET/verbose 0
>> /gate/geometry/enableAutoUpdate
>> /run/initialize
>>
>>
>> /gate/digitizer/Singles/insert adder
>> /gate/digitizer/Singles/insert readout
>> /gate/digitizer/Singles/readout/setDepth 1
>> /gate/digitizer/Singles/insert blurring
>> /gate/digitizer/Singles/blurring/setResolution 0.26
>> /gate/digitizer/Singles/blurring/setEnergyOfReference 511. keV
>> /gate/digitizer/Singles/insert thresholder
>> /gate/digitizer/Singles/thresholder/setThreshold 350. keV
>> /gate/digitizer/Singles/insert upholder
>> /gate/digitizer/Singles/upholder/setUphold 650. keV
>>
>>
>>
>> # C O I N C I S O R T E R
>> /gate/digitizer/Coincidences/setWindow 120. ns
>> /gate/digitizer/Coincidences/MultiplesPolicy takeWinnerOfGoods
>>
>> /gate/digitizer/name delay
>> /gate/digitizer/insert coincidenceSorter
>> /gate/digitizer/delay/setWindow 120. ns
>> /gate/digitizer/delay/setOffset 500. ns
>> /gate/digitizer/delay/MultiplesPolicy takeWinnerOfGoods
>>
>> /control/verbose 0
>> /grdm/verbose 0
>> /run/verbose 0
>> /event/verbose 0
>> /tracking/verbose 0
>> /gate/application/verbose 0
>> /gate/generator/verbose 0
>> /gate/stacking/verbose 0
>> /gate/event/verbose 0
>> /gate/source/verbose 0
>>
>> /control/execute sources.mac
>>
>> # O U T P U T
>>
>> /gate/output/verbose 0
>>
>>
>> /gate/output/ascii/setOutFileHitsFlag 1
>> /gate/output/ascii/setOutFileSinglesFlag 1
>> /gate/output/ascii/setOutFileCoincidencesFlag 1
>> /gate/output/ascii/setOutFiledelayFlag 1
>>
>> /gate/output/root/setFileName benchmarkPET
>> /gate/output/root/setRootHitFlag 0
>> /gate/output/root/setRootSinglesFlag 0
>> /gate/output/root/setRootCoincidencesFlag 1
>> /gate/output/root/setRootdelayFlag 1
>> /gate/output/root/setRootNtupleFlag 0
>> /gate/output/root/setSaveRndmFlag 0
>>
>>
>> # S T A R T
>> /gate/application/setTimeSlice 120. s
>> /gate/application/setTimeStart 0. s
>> /gate/application/setTimeStop 240. s
>> /gate/application/startDAQ
>>
>>
>>
>> Quoting Sonal Ambwani <ambwani at bu.edu>:
>>
>> > Dear Gate-users,
>> >
>> > I am suddenly getting the following error while running benchmarkSPECT :
>> >
>> > /gate/physics/setXRayCut 200. keV
>> > /gate/physics/setElectronCut 1. km
>> > /gate/physics/setDeltaRayCut 1. GeV
>> > /run/initialize
>> > WARNING !
>> > SetCutValueForOthers became obsolete.
>> > It is harmless to remove this invokation without any side effects.
>> > This dummy method implementation will be removed soon.
>> > /gate/digitizer/Singles/insert adder
>> > ***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
>> >
>> > ***** Batch is interupted!! *****
>> > Idle>
>> >
>> > Can someone please point out what might be wrong. This was working till
>> > a few days ago.
>> >
>> > Sonal Ambwani
>> >
>> > Dept. of Electrical and Computer Engineering
>> > Boston University
>> >
>> > _______________________________________________
>> > Gate-users mailing list
>> > Gate-users at lists.healthgrid.org
>> > http://lists.healthgrid.org/mailman/listinfo/gate-users
>> >
>>
>>
>>
>> Sonal Ambwani
>>
>> Dept. of Electrical and Computer Engineering
>> Boston University
>>
>>
>>
>> ------------------------------
>>
>> Message: 3
>> Date: Fri, 23 May 2008 13:53:17 -0400
>> From: Sonal Ambwani <ambwani at bu.edu>
>> Subject: Re: [Gate-users] Gate digitizer error---update
>> To: gate-users at lists.healthgrid.org
>> Message-ID: <20080523135317.uly9soqzc4c8s840 at www.bu.edu>
>> Content-Type: text/plain; charset=ISO-8859-1; format="flowed"
>>
>> benchmarkPET.mac works after disabling the root output completely.
>> Please help!
>>
>>
>> Quoting Sonal Ambwani <ambwani at bu.edu>:
>>
>> > Hi again,
>> >
>> > I am getting the same error for benchmarkPET. I guess it might help to
>> > mention the macro here:
>> >
>> > ###GATE : benchmarkPET.mac
>> > /gate/world/geometry/setXLength 150. cm
>> > /gate/world/geometry/setYLength 150. cm
>> > /gate/world/geometry/setZLength 150. cm
>> >
>> > /control/execute camera.mac
>> >
>> > /control/execute phantom.mac
>> >
>> > /control/execute physics.mac
>> >
>> > # I N I T I A L I Z E
>> > /gate/systems/cylindricalPET/verbose 0
>> > /gate/geometry/enableAutoUpdate
>> > /run/initialize
>> >
>> >
>> > /gate/digitizer/Singles/insert adder
>> > /gate/digitizer/Singles/insert readout
>> > /gate/digitizer/Singles/readout/setDepth 1
>> > /gate/digitizer/Singles/insert blurring
>> > /gate/digitizer/Singles/blurring/setResolution 0.26
>> > /gate/digitizer/Singles/blurring/setEnergyOfReference 511. keV
>> > /gate/digitizer/Singles/insert thresholder
>> > /gate/digitizer/Singles/thresholder/setThreshold 350. keV
>> > /gate/digitizer/Singles/insert upholder
>> > /gate/digitizer/Singles/upholder/setUphold 650. keV
>> >
>> >
>> >
>> > # C O I N C I S O R T E R
>> > /gate/digitizer/Coincidences/setWindow 120. ns
>> > /gate/digitizer/Coincidences/MultiplesPolicy takeWinnerOfGoods
>> >
>> > /gate/digitizer/name delay
>> > /gate/digitizer/insert coincidenceSorter
>> > /gate/digitizer/delay/setWindow 120. ns
>> > /gate/digitizer/delay/setOffset 500. ns
>> > /gate/digitizer/delay/MultiplesPolicy takeWinnerOfGoods
>> >
>> > /control/verbose 0
>> > /grdm/verbose 0
>> > /run/verbose 0
>> > /event/verbose 0
>> > /tracking/verbose 0
>> > /gate/application/verbose 0
>> > /gate/generator/verbose 0
>> > /gate/stacking/verbose 0
>> > /gate/event/verbose 0
>> > /gate/source/verbose 0
>> >
>> > /control/execute sources.mac
>> >
>> > # O U T P U T
>> >
>> > /gate/output/verbose 0
>> >
>> >
>> > /gate/output/ascii/setOutFileHitsFlag 1
>> > /gate/output/ascii/setOutFileSinglesFlag 1
>> > /gate/output/ascii/setOutFileCoincidencesFlag 1
>> > /gate/output/ascii/setOutFiledelayFlag 1
>> >
>> > /gate/output/root/setFileName benchmarkPET
>> > /gate/output/root/setRootHitFlag 0
>> > /gate/output/root/setRootSinglesFlag 0
>> > /gate/output/root/setRootCoincidencesFlag 1
>> > /gate/output/root/setRootdelayFlag 1
>> > /gate/output/root/setRootNtupleFlag 0
>> > /gate/output/root/setSaveRndmFlag 0
>> >
>> >
>> > # S T A R T
>> > /gate/application/setTimeSlice 120. s
>> > /gate/application/setTimeStart 0. s
>> > /gate/application/setTimeStop 240. s
>> > /gate/application/startDAQ
>> >
>> >
>> >
>> > Quoting Sonal Ambwani <ambwani at bu.edu>:
>> >
>> >> Dear Gate-users,
>> >>
>> >> I am suddenly getting the following error while running benchmarkSPECT :
>> >>
>> >> /gate/physics/setXRayCut 200. keV
>> >> /gate/physics/setElectronCut 1. km
>> >> /gate/physics/setDeltaRayCut 1. GeV
>> >> /run/initialize
>> >> WARNING !
>> >> SetCutValueForOthers became obsolete.
>> >> It is harmless to remove this invokation without any side effects.
>> >> This dummy method implementation will be removed soon.
>> >> /gate/digitizer/Singles/insert adder
>> >> ***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
>> >>
>> >> ***** Batch is interupted!! *****
>> >> Idle>
>> >>
>> >> Can someone please point out what might be wrong. This was working till
>> >> a few days ago.
>> >>
>> >> Sonal Ambwani
>> >>
>> >> Dept. of Electrical and Computer Engineering
>> >> Boston University
>> >>
>> >> _______________________________________________
>> >> Gate-users mailing list
>> >> Gate-users at lists.healthgrid.org
>> >> http://lists.healthgrid.org/mailman/listinfo/gate-users
>> >>
>> >
>> >
>> >
>> > Sonal Ambwani
>> >
>> > Dept. of Electrical and Computer Engineering
>> > Boston University
>> >
>> > _______________________________________________
>> > Gate-users mailing list
>> > Gate-users at lists.healthgrid.org
>> > http://lists.healthgrid.org/mailman/listinfo/gate-users
>> >
>>
>>
>>
>> Sonal Ambwani
>>
>> Dept. of Electrical and Computer Engineering
>> Boston University
>>
>>
>>
>> ------------------------------
>>
>> Message: 4
>> Date: Fri, 23 May 2008 19:51:50 +0200
>> From: "Javier Serrano" <fjaviersr at usal.es>
>> Subject: Re: [Gate-users] Transmission tomography
>> To: gate-users at lists.healthgrid.org
>> Message-ID:
>> <89978e4d0805231051m2239f53ci102cb532b02309c3 at mail.gmail.com>
>> Content-Type: text/plain; charset=ISO-8859-1
>>
>> > Richard Taschereau wrote:
>> > While it is technically possible to simulate an x-ray CT, the amount of
>> photons you would need is prohibitive.
>>
>> Yes, I think so too. I did try to simulate this with Geant4 some time
>> ago and I found this problem.
>>
>> > Franca Cassol-Brunner wrote:
>> > this will be available in the next Gate release, where a CT system will
>> be
>> > added.
>>
>> This is very interesting for me, especially if the next release is
>> coming soon. I would like to simulate a CT system with Gate even with
>> a limited number of photons or projections. I will keep waiting for
>> the next release.
>>
>> Thank you all.
>> Greetings, Javi.
>>
>>
>>
>>
>>
>> 2008/5/22 Franca Cassol-Brunner <cassol at cppm.in2p3.fr>:
>> > Javier Serrano wrote:
>> >
>> >> Is it possible to use Gate to simulate an x-ray scanner with an
>> >> external cone-beam source?
>> >
>> > Hello Javier,
>> >
>> > this will be available in the next Gate release, where a CT system will
>> be
>> > added. With the present release you can simulate the cone beam source but
>> > there is no adapted output for the CT images.
>> >
>> > Don't hesitate to contact me directly to get more details.
>> >
>> > Cheers
>> >
>> > Franca
>> >
>> >
>> > ****************************************************
>> > Dr. F. Cassol Brunner
>> > CPPM/IN2P3 (CNRS) Office: 305
>> > 163, Avenue de Luminy Phone : (+33) 491827248
>> > 13288, Marseille Fax : (+33) 491827299
>> > France
>> > ****************************************************
>> >
>>
>>
>> ------------------------------
>>
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.healthgrid.org
>> http://lists.healthgrid.org/mailman/listinfo/gate-users
>>
>>
>> End of Gate-users Digest, Vol 24, Issue 31
>> ******************************************
>>
>
>
>
> --
> e- + e+ -> ~~>
>
Sonal Ambwani
Dept. of Electrical and Computer Engineering
Boston University
More information about the Gate-users
mailing list