[Gate-users] Benchmark PET: command not found, directories missing
Liliana Caldeira
llcaldeira at gmail.com
Thu Jul 24 20:02:42 CEST 2008
Hello everyone.
I'm starting to use gate and I'm having some problems with the
benchmark PET. The error is the following:
***** COMMAND NOT FOUND </gate/digitizer/Singles/insert adder> *****
***** Batch is interupted!! *****
Ignoring confine condition
Ignoring confine condition
GateSourceMgr::ListSources: List of the sources in the source managaer
Source --------------> F18LineSource
ID : 0
type :
activity (Bq) : 100000
startTime (s) : 0
time (s) : 0
forcedUnstable : 1
forcedHalfLife (s) : 6586.2
verboseLevel : 0
----------------------
Source --------------> O15LineSource
ID : 1
type :
activity (Bq) : 100000
startTime (s) : 0
time (s) : 0
forcedUnstable : 1
forcedHalfLife (s) : 122.24
verboseLevel : 0
----------------------
***** COMMAND NOT FOUND </gate/output/ascii/setOutFileHitsFlag 0> *****
***** Batch is interupted!! *****
What concerns me is that there are some directories missing namely:
gate/digitizer and
gate/output
for some reason.
I have ROOT_5.14 (i had some problems with gcc version, but i think it
is ok now),CHLEP2.3.0.1, GEANT4.9.0.p02 and GATE3.1.2.
OpenSuse10.3
All environment variables look ok at least for me (I pasted them in
the end of this email if anyone wants to take a look).
Thank you for any response or idea,
Liliana Caldeira
G4BIN=./bin
CLHEP_LIB_DIR=/usr/local/lib
G4LEVELGAMMADATA=/home/pt104764/Programs/gate_v3.1.2/src/geant4.9.0.p02/data/PhotonEvaporation2.0
LESSKEY=/etc/lesskey.bin
GATE_USE_LMF=1
INFODIR=/usr/local/info:/usr/share/info:/usr/info
MANPATH=/usr/local/man:/usr/local/share/man:/usr/share/man
NNTPSERVER=news
KDE_MULTIHEAD=false
SSH_AGENT_PID=3543
HOSTNAME=linux-v9rv
DM_CONTROL=/var/run/xdmctl
XKEYSYMDB=/usr/share/X11/XKeysymDB
LMF_HOME=/home/pt104764/Programs/gate_v3.1.2/src/lmf_v3.0
G4ANALYSIS_USE_NTUPLE=1
G4INSTALL=/home/pt104764/Programs/gate_v3.1.2/src/geant4.9.0.p02
HOST=linux-v9rv
SHELL=/bin/bash
TERM=xterm
PROFILEREAD=true
HISTSIZE=1000
XDM_MANAGED=/var/run/xdmctl/xdmctl-:0,maysd,mayfn,sched,rsvd,method=classic
XDG_SESSION_COOKIE=a041c987b9a49cfc2335c80047c30b00-1216920559.754454-2141104657
TMPDIR=/tmp
GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/usr/share/themes//QtCurve/gtk-2.0/gtkrc:/home/pt104764/.gtkrc-2.0-qtengine:/home/pt104764/.gtkrc-2.0:/home/pt104764/.kde/share/config/gtkrc-2.0
KDE_NO_IPV6=1
GTK_RC_FILES=/etc/gtk/gtkrc:/home/pt104764/.gtkrc:/home/pt104764/.kde/share/config/gtkrc
GS_LIB=/home/pt104764/.fonts
G4INCLUDE=/home/pt104764/Programs/gate_v3.1.2/src/geant4.9.0.p02/include/
WINDOWID=33554440
MORE=-sl
OLDPWD=/home/pt104764/Programs/gate_v3.1.2/src/gate_v3.1.2/benchmarks
XSESSION_IS_UP=yes
G4VERSION=9.0
KDE_FULL_SESSION=true
G4LEDATA=/home/pt104764/Programs/gate_v3.1.2/src/geant4.9.0.p02/data/G4EMLOW5.1
GROFF_NO_SGR=yes
JRE_HOME=/usr/lib/jvm/jre
USER=pt104764
http_proxy=http://proxy.siemens.pt:3128
G4ANALYSIS_USE_ROOT=1
XMFLAGS=
LD_LIBRARY_PATH=/usr/local/lib
LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:
DESKTOP_LAUNCH=kde-open
G4ANALYSIS_USE=1
GATEHOME=/home/pt104764/Programs/gate_v3.1.2/src/gate_v3.1.2
XNLSPATH=/usr/share/X11/nls
G4VIS_USE=1
XMLIBS=
ENV=/etc/bash.bashrc
G4NEUTRONHPDATA=/home/pt104764/Programs/gate_v3.1.2/src/geant4.9.0.p02/data/G4NDL3.12
SSH_AUTH_SOCK=/tmp/ssh-XKPxe3487/agent.3487
HOSTTYPE=i386
G4VIS_BUILD_OPENGLX_DRIVER=1
ftp_proxy=http://proxy.siemens.pt:3128
G4TMP=./tmp
G4RADIOACTIVEDATA=/home/pt104764/Programs/gate_v3.1.2/src/geant4.9.0.p02/data/RadioactiveDecay3.2
SESSION_MANAGER=local/linux-v9rv:/tmp/.ICE-unix/3601
FROM_HEADER=
PAGER=less
CSHEDIT=emacs
XDG_CONFIG_DIRS=:/etc/xdg
KONSOLE_DCOP=DCOPRef(konsole-6012,konsole)
MINICOM=-c on
MAIL=/var/spool/mail/pt104764
PATH=/opt/kde3/bin:/home/pt104764/Programs/gate_v3.1.2/src/root/bin:Programs/gate_v3.1.2/src/gate_v3.1.2/bin/Linux-g++:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/home/pt104764/geant4/bin/Linux-g++
DESKTOP_SESSION=default
G4LIB=/home/pt104764/Programs/gate_v3.1.2/src/geant4.9.0.p02/lib
CPU=i686
JAVA_BINDIR=/usr/lib/jvm/jre/bin
G4LIB_BUILD_SHARED=1
KONSOLE_DCOP_SESSION=DCOPRef(konsole-6012,session-1)
INPUTRC=/home/pt104764/.inputrc
PWD=/home/pt104764/Programs/gate_v3.1.2/src/gate_v3.1.2/benchmarks/benchmarkPET
JAVA_HOME=/usr/lib/jvm/jre
XMODIFIERS=@im=local
G4VERSION9=1
G4LIB_BUILD_STATIC=1
CLHEP_BASE_DIR=/usr/local
LANG=pt_PT.UTF-8
KDE_SESSION_UID=1000
PYTHONSTARTUP=/etc/pythonstart
GATE_USE_OPTICAL=1
https_proxy=http://proxy.siemens.pt:3128
G4VIS_USE_OPENGLX=1
ROOTSYS=/home/pt104764/Programs/gate_v3.1.2/src/root
G4ANALYSIS_USE_FILE=1
G4UI_USE_TCSH=1
TEXINPUTS=:/home/pt104764/.TeX:/usr/share/doc/.TeX:/usr/doc/.TeX
CLHEP_INCLUDE_DIR=/usr/local/include
QT_SYSTEM_DIR=/usr/share/desktop-data
HOME=/home/pt104764
SHLVL=2
G4SYSTEM=Linux-g++
LESS_ADVANCED_PREPROCESSOR=no
OSTYPE=linux
XAWLIBS=
LS_OPTIONS=-N --color=tty -T 0
XCURSOR_THEME=DMZ
no_proxy=localhost, 127.0.0.1, siemens.pt, siemens.net
WINDOWMANAGER=/usr/bin/dbus-launch --sh-syntax --exit-with-session /usr/bin/kde
GTK_PATH=/usr/local/lib/gtk-2.0:/usr/lib/gtk-2.0
G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-15,CP1252
LESS=-M -I
MACHTYPE=i686-suse-linux
LOGNAME=pt104764
CVS_RSH=ssh
XDG_DATA_DIRS=/usr/share:/etc/opt/kde3/share:/opt/kde3/share
DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-tzBAL8sO1M,guid=c3cc4776957eef7a444f1e004888bbf0
G4WORKDIR=.
LESSOPEN=lessopen.sh %s
USE_FAM=
INFOPATH=/usr/local/info:/usr/share/info:/usr/info
DISPLAY=:0.0
CLHEP_LIB=CLHEP
XAUTHLOCALHOSTNAME=linux-v9rv
XAWFLAGS=
LESSCLOSE=lessclose.sh %s %s
G_BROKEN_FILENAMES=1
JAVA_ROOT=/usr/lib/jvm/jre
COLORTERM=
_=/usr/bin/env.
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