[Gate-users] GateMaterials.db issues (now with added download problems)

David Sarrut David.Sarrut at creatis.insa-lyon.fr
Thu Sep 9 07:34:01 CEST 2021


Hello,

everything should be ok now :
https://gate.uca.fr/download/vgate
https://opengate.readthedocs.io/en/latest/vgate.html

thanks Thomas et Lydia !
Cheers,
David

On Wed, Sep 8, 2021 at 12:15 PM BAKER, Mark (THE CLATTERBRIDGE CANCER
CENTRE NHS FOUNDATION TRUST) <mark.baker23 at nhs.net> wrote:

> Hi
>
>
>
> Thank you for all of the replies. I solved my original issue by running cd
> /home/gate/gate-exercises/exercises prior to my code, which solved the
> macroPath and gatematerials issue, so I never got any further trying to get
> V9, I will give it a check when I get back on my laptop though, although it
> sounds like it might already have been confirmed.
>
>
>
> Thank you
>
>
>
> Mark
>
>
>
> *From:* Lydia Maigne <lydia.maigne at clermont.in2p3.fr>
> *Sent:* 08 September 2021 08:37
> *To:* Josh Knowland <jknowland at lucernodynamics.com>
> *Cc:* David Leibold <D.Leibold at tudelft.nl>; BAKER, Mark (THE
> CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST) <mark.baker23 at nhs.net>;
> gate-users at lists.opengatecollaboration.org
> *Subject:* Re: [Gate-users] GateMaterials.db issues (now with added
> download problems)
>
>
>
> Dear all,
>
> The name of the VM has just been changed
>
>
>
> Best
>
>
>
> Lydia
>
>
>
> Le 7 sept. 2021 à 22:31, Josh Knowland <jknowland at lucernodynamics.com> a
> écrit :
>
>
>
> This is true. I actually did this within the past few days. The filename
> incorrectly says 8.2, but the VM is 9.
>
>
>
> Josh
>
>
>
> *From:* Gate-users <gate-users-bounces at lists.opengatecollaboration.org> *On
> Behalf Of *David Leibold
> *Sent:* Tuesday, September 7, 2021 4:15 PM
> *To:* BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST) <
> mark.baker23 at nhs.net>
> *Cc:* gate-users at lists.opengatecollaboration.org
> *Subject:* Re: [Gate-users] GateMaterials.db issues (now with added
> download problems)
>
>
>
> Hi Mark,
>
>
>
> I am pretty sure that only the filename of the .ova file is not correct;
> it does, in fact, contain a virtual machine with Gate v9.0. Do you mind
> setting up a machine with the vGATE_ v8.2.0.ova file and check whether this
> actually true?
>
>
>
> Kind regards,
>
> David
>
>
>
>
>
>
>
>
> On 2 Sep2021, at 10:23, BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS
> FOUNDATION TRUST) <mark.baker23 at nhs.net> wrote:
>
>
>
> Hi everyone
>
>
>
> I still haven’t resolved this issue, so I thought I’d try and start afresh
> with a new version of vGate9.0 but when I go to opengatecollaboration.org to
> the Download page, the link for version 9.0 takes you to a GoogleDrive page
> but for vGATE_v8.2.0.ova (a previous emailer had the same issue on the
> mailbase also). The opengate.readthedocs.io/en/latest/vgate.html also has
> the same v8.2 file as the direct link
>
>
>
> I’ve got vGate9.0 installed on my machine, so I must have got it from
> somewhere originally. Has anyone got any suggestions?
>
>
>
> Thank you
>
>
>
> *Mark Baker*
>
> Principal Clinical Physicist
>
> Imaging Physics
>
> The Clatterbridge Cancer Centre NHS Foundation Trust
>
>
>
> CCCW Tel:  0151 556 5030
>
> CCCL Tel: 0151 318 8438
>
> Email: mark.baker23 at nhs.net
>
>
>
> *From:* Gate-users <gate-users-bounces at lists.opengatecollaboration.org> *On
> Behalf Of *BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION
> TRUST)
> *Sent:* 26 August 2021 16:12
> *To:* gate-users at lists.opengatecollaboration.org
> *Subject:* [Gate-users] GateMaterials.db issues
>
>
>
> Hi everyone
>
>
>
> I’ve spent the day scratching my head over something that I think is
> likely a pretty simple fix. I’ve come back to vGate 9.0 after around a year
> away, so I was refreshing myself with some old macros I wrote and I get an
> issue regarding setting the materials database, using both my own
> previously working macro plus trying an inbuilt ex1.mac file as well. Both
> files generate the following message:
>
>
>
> ***G4 Exception              :               GateMDBFile
>
>                 Issued by             :
> GateMDBFile::GateMDBFile
>
> Could not find material database file ‘data/GateMaterials.db’
>
> ***Fatal Exception *** Core Dump ***
>
> [G4-cerr] **** Track information is not available at this moment
>
> [G4-cerr] **** Step information is not available at this moment
>
>
>
> A quick look through the mailing list suggests that it’s possible that the
> macros should direct to /data/… rather than data/ but changing that didn’t
> help. Additional suggests previously included unspecified material in the
> macro that isn’t in the database, but ex1.mac only utilises water and my
> own macro only uses air and water. I’ve checked that they are both in the
> database, and both are correctly spelled (it is the default database as
> well). The macropath has been changed to
> /home/gate/gate-exercises/exercises which is the location of both the data
> and mac folders.
>
>
>
> Any ideas?
>
>
>
> Thank you
>
>
>
> *Mark Baker*
>
> Principal Clinical Physicist
>
> Imaging Physics
>
> The Clatterbridge Cancer Centre NHS Foundation Trust
>
>
>
> CCCW Tel:  0151 556 5030
>
> CCCL Tel: 0151 318 8438
>
> Email: mark.baker23 at nhs.net
>
>
>
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> ************************************************************
> Lydia Maigne, PhD
>
> Laboratoire de Physique de Clermont
> UMR 6533 CNRS/IN2P3 - Université Clermont Auvergne
>
> Campus Universitaire des Cézeaux
> 4, avenue Blaise Pascal
> TSA 60026
> CS 60026
> 63178 - Aubière Cedex
> FRANCE
>
> Tel: (33) (0) 4 73 40 51 23
> email: Lydia.Maigne at clermont.in2p3.fr <Lydia.Maigne at clermont.in2p3.fr>
> Website: http://see.lpc.uca.fr
> ************************************************************
>
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> safe.
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>
> **************************************************************************************
> ******************************
>
> This message may contain confidential information. If you are not the
> intended recipient please:
> i) inform the sender that you have received the message in error before
> deleting it; and
> ii) do not disclose, copy or distribute information in this e-mail or take
> any action in relation to its content (to do so is strictly prohibited and
> may be unlawful).
> Thank you for your co-operation.
>
> NHSmail is the secure email, collaboration and directory service available
> for all NHS staff in England. NHSmail is approved for exchanging patient
> data and other sensitive information with NHSmail and other accredited
> email services.
>
> For more information and to find out how you can switch visit Joining
> NHSmail – NHSmail Support
> <https://support.nhs.net/article-categories/joining-nhsmail/>
>
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-- 
David Sarrut, Phd
Directeur de recherche CNRS
CREATIS, UMR CNRS 5220, Inserm U1294
Centre de lutte contre le cancer Léon Bérard
28 rue Laënnec, 69373 Lyon cedex 08
Tel : 04 78 78 51 51 / 06 74 72 05 42
http://dsarrut.github.io <http://www.creatis.insa-lyon.fr/~dsarrut>
_________________________________
 "2 + 2 = 5,  for extremely large values of 2"
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