[Gate-users] GateMaterials.db issues (now with added download problems)

Wed Sep 8 12:15:04 CEST 2021

Hi

Thank you for all of the replies. I solved my original issue by running cd /home/gate/gate-exercises/exercises prior to my code, which solved the macroPath and gatematerials issue, so I never got any further trying to get V9, I will give it a check when I get back on my laptop though, although it sounds like it might already have been confirmed.

Thank you

Mark

From: Lydia Maigne <lydia.maigne at clermont.in2p3.fr>
Sent: 08 September 2021 08:37
To: Josh Knowland <jknowland at lucernodynamics.com>
Cc: David Leibold <D.Leibold at tudelft.nl>; BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST) <mark.baker23 at nhs.net>; gate-users at lists.opengatecollaboration.org
Subject: Re: [Gate-users] GateMaterials.db issues (now with added download problems)

Dear all,
The name of the VM has just been changed

Best

Lydia

Le 7 sept. 2021 à 22:31, Josh Knowland <jknowland at lucernodynamics.com<mailto:jknowland at lucernodynamics.com>> a écrit :

This is true. I actually did this within the past few days. The filename incorrectly says 8.2, but the VM is 9.

Josh

From: Gate-users <gate-users-bounces at lists.opengatecollaboration.org<mailto:gate-users-bounces at lists.opengatecollaboration.org>> On Behalf Of David Leibold
Sent: Tuesday, September 7, 2021 4:15 PM
To: BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST) <mark.baker23 at nhs.net<mailto:mark.baker23 at nhs.net>>
Cc: gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
Subject: Re: [Gate-users] GateMaterials.db issues (now with added download problems)

Hi Mark,

I am pretty sure that only the filename of the .ova file is not correct; it does, in fact, contain a virtual machine with Gate v9.0. Do you mind setting up a machine with the vGATE_ v8.2.0.ova file and check whether this actually true?

Kind regards,
David

On 2 Sep2021, at 10:23, BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST) <mark.baker23 at nhs.net<mailto:mark.baker23 at nhs.net>> wrote:

Hi everyone

I still haven’t resolved this issue, so I thought I’d try and start afresh with a new version of vGate9.0 but when I go to opengatecollaboration.org<http://opengatecollaboration.org/> to the Download page, the link for version 9.0 takes you to a GoogleDrive page but for vGATE_v8.2.0.ova (a previous emailer had the same issue on the mailbase also). The opengate.readthedocs.io/en/latest/vgate.html<http://opengate.readthedocs.io/en/latest/vgate.html> also has the same v8.2 file as the direct link

I’ve got vGate9.0 installed on my machine, so I must have got it from somewhere originally. Has anyone got any suggestions?

Thank you

Mark Baker
Principal Clinical Physicist
Imaging Physics
The Clatterbridge Cancer Centre NHS Foundation Trust

CCCW Tel:  0151 556 5030
CCCL Tel: 0151 318 8438
Email: mark.baker23 at nhs.net<mailto:mark.baker23 at nhs.net>

From: Gate-users <gate-users-bounces at lists.opengatecollaboration.org<mailto:gate-users-bounces at lists.opengatecollaboration.org>> On Behalf Of BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST)
Sent: 26 August 2021 16:12
To: gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>
Subject: [Gate-users] GateMaterials.db issues

Hi everyone

I’ve spent the day scratching my head over something that I think is likely a pretty simple fix. I’ve come back to vGate 9.0 after around a year away, so I was refreshing myself with some old macros I wrote and I get an issue regarding setting the materials database, using both my own previously working macro plus trying an inbuilt ex1.mac file as well. Both files generate the following message:

***G4 Exception              :               GateMDBFile
                Issued by             :               GateMDBFile::GateMDBFile
Could not find material database file ‘data/GateMaterials.db’
***Fatal Exception *** Core Dump ***
[G4-cerr] **** Track information is not available at this moment
[G4-cerr] **** Step information is not available at this moment

A quick look through the mailing list suggests that it’s possible that the macros should direct to /data/… rather than data/ but changing that didn’t help. Additional suggests previously included unspecified material in the macro that isn’t in the database, but ex1.mac only utilises water and my own macro only uses air and water. I’ve checked that they are both in the database, and both are correctly spelled (it is the default database as well). The macropath has been changed to /home/gate/gate-exercises/exercises which is the location of both the data and mac folders.

Any ideas?

Thank you

Mark Baker
Principal Clinical Physicist
Imaging Physics
The Clatterbridge Cancer Centre NHS Foundation Trust

CCCW Tel:  0151 556 5030
CCCL Tel: 0151 318 8438
Email: mark.baker23 at nhs.net<mailto:mark.baker23 at nhs.net>

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Lydia Maigne, PhD

Laboratoire de Physique de Clermont
UMR 6533 CNRS/IN2P3 - Université Clermont Auvergne

Campus Universitaire des Cézeaux
4, avenue Blaise Pascal
TSA 60026
CS 60026
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FRANCE

Tel: (33) (0) 4 73 40 51 23
email: Lydia.Maigne at clermont.in2p3.fr<mailto:Lydia.Maigne at clermont.in2p3.fr>
Website: http://see.lpc.uca.fr
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