[Gate-users] Gate-users Digest, Vol 187, Issue 23

Anes Mohammed anes.m.s.q at gmail.com
Sun Dec 26 07:34:27 CET 2021 

Dear Mr.Konstantinos thank you so much for your help. I solved some of
these problems, but now I have a new error in my code. the error in
attached image. Do you know any idea about it?

On Thu, 23 Dec 2021, 13:29 , <
gate-users-request at lists.opengatecollaboration.org> wrote:

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>    1. addsource (Anes Mohammed)
>    2. Re: addsource (Konstantinos P. Chatzipapas)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 22 Dec 2021 21:37:51 +0300
> From: Anes Mohammed <anes.m.s.q at gmail.com>
> To: gate-users <gate-users at lists.opengatecollaboration.org>
> Subject: [Gate-users] addsource
> Message-ID:
>         <
> CAPNYzOZNntNxVv+Necq+QKkObUktPQoJ-TH4uVpaTGM+-B5B2g at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear Gate User's
> when I  implementation of the attached cod
>
> #==============================================================================================
> # Visualization
>
> #==============================================================================================
> /vis/open                             OGLSQt
> /vis/viewer/set/background black
> /vis/drawVolume
> /vis/viewer/flush
> /vis/viewer/set/viewpointThetaPhi 60 30
> /vis/viewer/zoom 10
> /tracking/storeTrajectory             1
> /vis/scene/add/trajectories
> /vis/scene/endOfEventAction           accumulate -1
> /vis/scene/add/axes
> /gate/verbose Physic    0
> /gate/verbose Cuts      0
> /gate/verbose SD        0
> /gate/verbose Actions   0
> /gate/verbose Actor     0
> /gate/verbose Step      0
> /gate/verbose Error     1
> /gate/verbose Warning   0
> /gate/verbose Output    0
> /gate/verbose Beam      0
> /gate/verbose Volume    0
> /gate/verbose Image     0
> /gate/verbose Geometry  0
> /gate/verbose Core      0
>
> /run/verbose 0
> /event/verbose 0
> /tracking/verbose 0
>
>
>
> #==============================================================================================
> # Materials
>
> #==============================================================================================
>
> /gate/geometry/setMaterialDatabase    data/GateMaterials.db
>
>
> #==============================================================================================
> # Geometry (world)
>
> #==============================================================================================
> # G E O M E T R Y
> #####
>
> # World
>
> /gate/world/geometry/setXLength 100 cm
> /gate/world/geometry/setYLength 100 cm
> /gate/world/geometry/setZLength 100 cm
> /gate/world/vis/setColor red
> /gate/world/vis/forceWireframe
> /gate/world/describe
> # Scanner Head
> /gate/world/daughters/name SPECThead
> /gate/world/daughters/insert box
> /gate/SPECThead/geometry/setXLength  7. cm
> /gate/SPECThead/geometry/setYLength 21. cm
> /gate/SPECThead/geometry/setZLength 30. cm
> #Distance bettween SPECThead box##
> /gate/SPECThead/placement/setTranslation  22.0 0. 0. cm
> /gate/SPECThead/setMaterial Air
>
> /gate/SPECThead/placement/setRotationAxis 0 0 1
> /gate/SPECThead/placement/setRotationAngle 180 deg
> /gate/SPECThead/vis/forceWireframe
>
>
> # Shielding
> /gate/SPECThead/daughters/name shielding
> /gate/SPECThead/daughters/insert box
> /gate/shielding/geometry/setXLength  7. cm
> /gate/shielding/geometry/setYLength 21. cm
> /gate/shielding/geometry/setZLength 30. cm
> /gate/shielding/placement/setTranslation  0. 0. 0. cm
> /gate/shielding/setMaterial Lead
> /gate/shielding/vis/setColor grey
> /gate/shielding/vis/forceSolid
> # Collimator
> /gate/SPECThead/daughters/name collimator
> /gate/SPECThead/daughters/insert box
> /gate/collimator/geometry/setXLength 3. cm
> /gate/collimator/geometry/setYLength 19. cm
> /gate/collimator/geometry/setZLength 28. cm
> #the loction of collimator relative to y-axes##
> /gate/collimator/placement/setTranslation  -2. 0. 0. cm
> /gate/collimator/setMaterial Lead
> /gate/collimator/vis/setColor red
> /gate/collimator/vis/forceWireframe
> /gate/collimator/describe
> /gate/collimator/daughters/name hole
> /gate/collimator/daughters/insert hexagone
> /gate/hole/geometry/setHeight 3. cm
> /gate/hole/geometry/setRadius .01 cm
> /gate/hole/placement/setRotationAxis 0  0  1
> /gate/hole/placement/setRotationAngle 90 deg
> /gate/hole/setMaterial Air
> #
> # Repeat the hole in an array
> ##
> /gate/hole/repeaters/insert cubicArray
> /gate/hole/cubicArray/setRepeatNumberX 1
> /gate/hole/cubicArray/setRepeatNumberY 52
> /gate/hole/cubicArray/setRepeatNumberZ 44
> /gate/hole/cubicArray/setRepeatVector 0. 0.36  0.624 cm
> #
> # Repeat these holes in a linear
> ##
> /gate/hole/repeaters/insert linear
> /gate/hole/linear/setRepeatNumber 2
> /gate/hole/linear/setRepeatVector 0. 0.18 0.312 cm
>
>
> # CRYSTAL
> /gate/SPECThead/daughters/name crystal
> /gate/SPECThead/daughters/insert box
> /gate/crystal/geometry/setXLength 1. cm
> /gate/crystal/geometry/setYLength  19. cm
> /gate/crystal/geometry/setZLength  28. cm
> /gate/crystal/placement/setTranslation  0. 0. 0. cm
> /gate/crystal/setMaterial NaI
> /gate/crystal/vis/setColor yellow
>
> # BACK-COMPARTMENT
> /gate/SPECThead/daughters/name compartment
> /gate/SPECThead/daughters/insert box
> /gate/compartment/geometry/setXLength 2.5 cm
> /gate/compartment/geometry/setYLength 19. cm
> /gate/compartment/geometry/setZLength 28. cm
> /gate/compartment/placement/setTranslation   1.75 0. 0. cm
> /gate/compartment/setMaterial Glass
> /gate/compartment/vis/setColor grey
>
> # TABLE
> /gate/world/daughters/name table
> /gate/world/daughters/insert box
> /gate/table/geometry/setXLength 40 cm
> /gate/table/geometry/setYLength 4. cm
> /gate/table/geometry/setZLength 40. cm
> /gate/table/placement/setRotationAxis 0 1 0
> /gate/table/placement/setRotationAngle 90 deg
> /gate/table/placement/setTranslation  0. -14.9 0. cm
> /gate/table/setMaterial  Polystyrene
> /gate/table/vis/setColor white
> /gate/table/vis/forceSolid
>
> # PHANTOM
> /gate/world/daughters/name Phantom
> /gate/world/daughters/insert box
> /gate/Phantom/geometry/setXLength 30.  cm
> /gate/Phantom/geometry/setYLength 30. cm
> /gate/Phantom/geometry/setZLength 30. cm
> /gate/Phantom/placement/setTranslation 0. 0. 0. cm
> /gate/Phantom/setMaterial Water
> /gate/Phantom/vis/setColor blue
> /gate/Phantom/vis/forceWireframe
> # S Y S T E M
> ######
> /gate/systems/SPECThead/crystal/attach crystal
> /gate/systems/SPECThead/describe
> # S E N S I T I V E   D E T E C T O R S
> /gate/crystal/attachCrystalSD
>
> # Phantom SD
> /gate/Phantom/attachPhantomSD
> /gate/table/attachPhantomSD
> /gate/compartment/attachPhantomSD
> /gate/shielding/attachPhantomSD
> /gate/SPECThead/attachPhantomSD
> /gate/collimator/attachPhantomSD
>
> #  P H Y S I C S
> #####
> /gate/physics/addProcess PhotoElectric
> /gate/physics/processes/PhotoElectric/setModel StandardModel
>
> /gate/physics/addProcess Compton
> /gate/physics/processes/Compton/setModel PenelopeModel
>
> /gate/physics/addProcess RayleighScattering
> /gate/physics/processes/RayleighScattering/setModel PenelopeModel
>
> /gate/physics/addProcess ElectronIonisation
> /gate/physics/processes/ElectronIonisation/setModel StandardModel e-
>
> /gate/physics/addProcess Bremsstrahlung
> /gate/physics/processes/Bremsstrahlung/setModel StandardModel e-
>
> /gate/physics/addProcess MultipleScattering e-
>
> /gate/physics/processList Enabled
> /gate/physics/processList Initialized
>
> #  C U T S
> #####
> /gate/physics/Gamma/SetCutInRegion      SPECThead 0.1 cm
> /gate/physics/Electron/SetCutInRegion   SPECThead 1.0 cm
> # Source 1
> /gate/source/addSource mySource_1
> /gate/source/mySource_1/gps/type Volume
> /gate/source/mySource_1/gps/shape Cylinder
> /gate/source/mySource_1/gps/radius 0.5 mm
> /gate/source/mySource_1/gps/halfz 100 mm
> /gate/source/mySource_1/gps/centre 0. 0. 0. cm
> /gate/source/mySource_1/gps/particle gamma
> /gate/source/mySource_1/gps/energy 140. keV
>
> #  1 MBq
> #/gate/source/mySource_1/setActivity 1000000 Bq
> /gate/source/mySource_1/setActivity 1 Bq
> # Emission angle: isotropic
> /gate/source/mySource_1/gps/angtype iso
> /gate/source/list
> #====================================================
> #DATA OUTPUT
> #===================================================
> /gate/output/allowNoOutput
>
>
> #=====================================================
> # START BEAMS
> #=====================================================
>
>
> /gate/random/setEngineName MersenneTwister
> /gate/random/setEngineSeed auto
> #/gate/application/setTotalNumberOfPrimaries 100000
> /gate/application/start
>
>
>
>
>
> #==============================================================================================
> # Initialisation
>
> #==============================================================================================
>
> /gate/run/initialize
>
> #==============================================================================================
> # Main program
>
> #==============================================================================================
>
> #/gate/output/allowNoOutput
>
> /gate/application/setTotalNumberOfPrimaries 1
> /gate/application/start
>
> This error appear for me
> ***** Illegal application state </gate/source/addSource mySource_1> *****
> ***** Batch is interrupted!! *****
>
> thanks for your help
> -------------- next part --------------
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>
> ------------------------------
>
> Message: 2
> Date: Thu, 23 Dec 2021 10:20:27 +0000 (UTC)
> From: "Konstantinos P. Chatzipapas" <konhat88 at yahoo.gr>
> To: gate-users <gate-users at lists.opengatecollaboration.org>,  Anes
>         Mohammed <anes.m.s.q at gmail.com>
> Subject: Re: [Gate-users] addsource
> Message-ID: <1003764488.1333227.1640254827686 at mail.yahoo.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hello Anes,
> A first problem with your code is that /gate/run/initialize   should not
> be in the end. It must be before the source definition. To be accurate,
> before these lines: # Source 1/gate/source/addSource mySource_1
>
> Regards,Konstantinos----------------------------------------------------- Konstantinos
> Chatzipapas
>     Medical Physicist, Ph.D.
>         University of Patras
>
>
>     Στις Τετάρτη, 22 Δεκεμβρίου 2021, 08:43:15 μ.μ. EET, ο χρήστης Anes
> Mohammed <anes.m.s.q at gmail.com> έγραψε:
>
>  Dear Gate User's
> when I implementation of the attached
> cod#==============================================================================================
> # Visualization
>
> #==============================================================================================
> /vis/open                             OGLSQt
> /vis/viewer/set/background black
> /vis/drawVolume
> /vis/viewer/flush
> /vis/viewer/set/viewpointThetaPhi 60 30
> /vis/viewer/zoom 10
> /tracking/storeTrajectory             1
> /vis/scene/add/trajectories
> /vis/scene/endOfEventAction           accumulate -1
> /vis/scene/add/axes
> /gate/verbose Physic    0
> /gate/verbose Cuts      0
> /gate/verbose SD        0
> /gate/verbose Actions   0
> /gate/verbose Actor     0
> /gate/verbose Step      0
> /gate/verbose Error     1
> /gate/verbose Warning   0
> /gate/verbose Output    0
> /gate/verbose Beam      0
> /gate/verbose Volume    0
> /gate/verbose Image     0
> /gate/verbose Geometry  0
> /gate/verbose Core      0
>
> /run/verbose 0
> /event/verbose 0
> /tracking/verbose 0
>
>
>
> #==============================================================================================
> # Materials
>
> #==============================================================================================
>
> /gate/geometry/setMaterialDatabase    data/GateMaterials.db
>
>
> #==============================================================================================
> # Geometry (world)
>
> #==============================================================================================
> # G E O M E T R Y
> #####
>
> # World
>
> /gate/world/geometry/setXLength 100 cm
> /gate/world/geometry/setYLength 100 cm
> /gate/world/geometry/setZLength 100 cm
> /gate/world/vis/setColor red
> /gate/world/vis/forceWireframe
> /gate/world/describe
> # Scanner Head
> /gate/world/daughters/name SPECThead
> /gate/world/daughters/insert box
> /gate/SPECThead/geometry/setXLength  7. cm
> /gate/SPECThead/geometry/setYLength 21. cm
> /gate/SPECThead/geometry/setZLength 30. cm
> #Distance bettween SPECThead box##
> /gate/SPECThead/placement/setTranslation  22.0 0. 0. cm
> /gate/SPECThead/setMaterial Air
>
> /gate/SPECThead/placement/setRotationAxis 0 0 1
> /gate/SPECThead/placement/setRotationAngle 180 deg
> /gate/SPECThead/vis/forceWireframe
>
>
> # Shielding
> /gate/SPECThead/daughters/name shielding
> /gate/SPECThead/daughters/insert box
> /gate/shielding/geometry/setXLength  7. cm
> /gate/shielding/geometry/setYLength 21. cm
> /gate/shielding/geometry/setZLength 30. cm
> /gate/shielding/placement/setTranslation  0. 0. 0. cm
> /gate/shielding/setMaterial Lead
> /gate/shielding/vis/setColor grey
> /gate/shielding/vis/forceSolid
> # Collimator
> /gate/SPECThead/daughters/name collimator
> /gate/SPECThead/daughters/insert box
> /gate/collimator/geometry/setXLength 3. cm
> /gate/collimator/geometry/setYLength 19. cm
> /gate/collimator/geometry/setZLength 28. cm
> #the loction of collimator relative to y-axes##
> /gate/collimator/placement/setTranslation  -2. 0. 0. cm
> /gate/collimator/setMaterial Lead
> /gate/collimator/vis/setColor red
> /gate/collimator/vis/forceWireframe
> /gate/collimator/describe
> /gate/collimator/daughters/name hole
> /gate/collimator/daughters/insert hexagone
> /gate/hole/geometry/setHeight 3. cm
> /gate/hole/geometry/setRadius .01 cm
> /gate/hole/placement/setRotationAxis 0  0  1
> /gate/hole/placement/setRotationAngle 90 deg
> /gate/hole/setMaterial Air
> #
> # Repeat the hole in an array
> ##
> /gate/hole/repeaters/insert cubicArray
> /gate/hole/cubicArray/setRepeatNumberX 1
> /gate/hole/cubicArray/setRepeatNumberY 52
> /gate/hole/cubicArray/setRepeatNumberZ 44
> /gate/hole/cubicArray/setRepeatVector 0. 0.36  0.624 cm
> #
> # Repeat these holes in a linear
> ##
> /gate/hole/repeaters/insert linear
> /gate/hole/linear/setRepeatNumber 2
> /gate/hole/linear/setRepeatVector 0. 0.18 0.312 cm
>
>
> # CRYSTAL
> /gate/SPECThead/daughters/name crystal
> /gate/SPECThead/daughters/insert box
> /gate/crystal/geometry/setXLength 1. cm
> /gate/crystal/geometry/setYLength  19. cm
> /gate/crystal/geometry/setZLength  28. cm
> /gate/crystal/placement/setTranslation  0. 0. 0. cm
> /gate/crystal/setMaterial NaI
> /gate/crystal/vis/setColor yellow
>
> # BACK-COMPARTMENT
> /gate/SPECThead/daughters/name compartment
> /gate/SPECThead/daughters/insert box
> /gate/compartment/geometry/setXLength 2.5 cm
> /gate/compartment/geometry/setYLength 19. cm
> /gate/compartment/geometry/setZLength 28. cm
> /gate/compartment/placement/setTranslation   1.75 0. 0. cm
> /gate/compartment/setMaterial Glass
> /gate/compartment/vis/setColor grey
>
> # TABLE
> /gate/world/daughters/name table
> /gate/world/daughters/insert box
> /gate/table/geometry/setXLength 40 cm
> /gate/table/geometry/setYLength 4. cm
> /gate/table/geometry/setZLength 40. cm
> /gate/table/placement/setRotationAxis 0 1 0
> /gate/table/placement/setRotationAngle 90 deg
> /gate/table/placement/setTranslation  0. -14.9 0. cm
> /gate/table/setMaterial  Polystyrene
> /gate/table/vis/setColor white
> /gate/table/vis/forceSolid
>
> # PHANTOM
> /gate/world/daughters/name Phantom
> /gate/world/daughters/insert box
> /gate/Phantom/geometry/setXLength 30.  cm
> /gate/Phantom/geometry/setYLength 30. cm
> /gate/Phantom/geometry/setZLength 30. cm
> /gate/Phantom/placement/setTranslation 0. 0. 0. cm
> /gate/Phantom/setMaterial Water
> /gate/Phantom/vis/setColor blue
> /gate/Phantom/vis/forceWireframe
> # S Y S T E M
> ######
> /gate/systems/SPECThead/crystal/attach crystal
> /gate/systems/SPECThead/describe
> # S E N S I T I V E   D E T E C T O R S
> /gate/crystal/attachCrystalSD
>
> # Phantom SD
> /gate/Phantom/attachPhantomSD
> /gate/table/attachPhantomSD
> /gate/compartment/attachPhantomSD
> /gate/shielding/attachPhantomSD
> /gate/SPECThead/attachPhantomSD
> /gate/collimator/attachPhantomSD
>
> #  P H Y S I C S
> #####
> /gate/physics/addProcess PhotoElectric
> /gate/physics/processes/PhotoElectric/setModel StandardModel
>
> /gate/physics/addProcess Compton
> /gate/physics/processes/Compton/setModel PenelopeModel
>
> /gate/physics/addProcess RayleighScattering
> /gate/physics/processes/RayleighScattering/setModel PenelopeModel
>
> /gate/physics/addProcess ElectronIonisation
> /gate/physics/processes/ElectronIonisation/setModel StandardModel e-
>
> /gate/physics/addProcess Bremsstrahlung
> /gate/physics/processes/Bremsstrahlung/setModel StandardModel e-
>
> /gate/physics/addProcess MultipleScattering e-
>
> /gate/physics/processList Enabled
> /gate/physics/processList Initialized
>
> #  C U T S
> #####
> /gate/physics/Gamma/SetCutInRegion      SPECThead 0.1 cm
> /gate/physics/Electron/SetCutInRegion   SPECThead 1.0 cm
> # Source 1
> /gate/source/addSource mySource_1
> /gate/source/mySource_1/gps/type Volume
> /gate/source/mySource_1/gps/shape Cylinder
> /gate/source/mySource_1/gps/radius 0.5 mm
> /gate/source/mySource_1/gps/halfz 100 mm
> /gate/source/mySource_1/gps/centre 0. 0. 0. cm
> /gate/source/mySource_1/gps/particle gamma
> /gate/source/mySource_1/gps/energy 140. keV
>
> #  1 MBq
> #/gate/source/mySource_1/setActivity 1000000 Bq
> /gate/source/mySource_1/setActivity 1 Bq
> # Emission angle: isotropic
> /gate/source/mySource_1/gps/angtype iso
> /gate/source/list
> #====================================================
> #DATA OUTPUT
> #===================================================
> /gate/output/allowNoOutput
>
>
> #=====================================================
> # START BEAMS
> #=====================================================
>
>
> /gate/random/setEngineName MersenneTwister
> /gate/random/setEngineSeed auto
> #/gate/application/setTotalNumberOfPrimaries 100000
> /gate/application/start
>
>
>
>
>
> #==============================================================================================
> # Initialisation
>
> #==============================================================================================
>
> /gate/run/initialize
>
> #==============================================================================================
> # Main program
>
> #==============================================================================================
>
> #/gate/output/allowNoOutput
>
> /gate/application/setTotalNumberOfPrimaries 1
> /gate/application/start
> This error appear for me
> ***** Illegal application state </gate/source/addSource mySource_1> *****
> ***** Batch is interrupted!! *****
> thanks for your help
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
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>
> Subject: Digest Footer
>
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> ------------------------------
>
> End of Gate-users Digest, Vol 187, Issue 23
> *******************************************
>
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