<div dir="ltr"><div dir="ltr"><div dir="auto">Dear Mr.Konstantinos thank you so much for your help. I solved some of these problems, but now I have a new error in my code. the error in attached image. Do you know any idea about it?</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, 23 Dec 2021, 13:29 , <<a href="mailto:gate-users-request@lists.opengatecollaboration.org" target="_blank">gate-users-request@lists.opengatecollaboration.org</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Send Gate-users mailing list submissions to<br>
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Today's Topics:<br>
<br>
1. addsource (Anes Mohammed)<br>
2. Re: addsource (Konstantinos P. Chatzipapas)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Wed, 22 Dec 2021 21:37:51 +0300<br>
From: Anes Mohammed <<a href="mailto:anes.m.s.q@gmail.com" rel="noreferrer" target="_blank">anes.m.s.q@gmail.com</a>><br>
To: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org" rel="noreferrer" target="_blank">gate-users@lists.opengatecollaboration.org</a>><br>
Subject: [Gate-users] addsource<br>
Message-ID:<br>
<<a href="mailto:CAPNYzOZNntNxVv%2BNecq%2BQKkObUktPQoJ-TH4uVpaTGM%2B-B5B2g@mail.gmail.com" rel="noreferrer" target="_blank">CAPNYzOZNntNxVv+Necq+QKkObUktPQoJ-TH4uVpaTGM+-B5B2g@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Dear Gate User's<br>
when I implementation of the attached cod<br>
#==============================================================================================<br>
# Visualization<br>
#==============================================================================================<br>
/vis/open OGLSQt<br>
/vis/viewer/set/background black<br>
/vis/drawVolume<br>
/vis/viewer/flush<br>
/vis/viewer/set/viewpointThetaPhi 60 30<br>
/vis/viewer/zoom 10<br>
/tracking/storeTrajectory 1<br>
/vis/scene/add/trajectories<br>
/vis/scene/endOfEventAction accumulate -1<br>
/vis/scene/add/axes<br>
/gate/verbose Physic 0<br>
/gate/verbose Cuts 0<br>
/gate/verbose SD 0<br>
/gate/verbose Actions 0<br>
/gate/verbose Actor 0<br>
/gate/verbose Step 0<br>
/gate/verbose Error 1<br>
/gate/verbose Warning 0<br>
/gate/verbose Output 0<br>
/gate/verbose Beam 0<br>
/gate/verbose Volume 0<br>
/gate/verbose Image 0<br>
/gate/verbose Geometry 0<br>
/gate/verbose Core 0<br>
<br>
/run/verbose 0<br>
/event/verbose 0<br>
/tracking/verbose 0<br>
<br>
<br>
#==============================================================================================<br>
# Materials<br>
#==============================================================================================<br>
<br>
/gate/geometry/setMaterialDatabase data/GateMaterials.db<br>
<br>
#==============================================================================================<br>
# Geometry (world)<br>
#==============================================================================================<br>
# G E O M E T R Y<br>
#####<br>
<br>
# World<br>
<br>
/gate/world/geometry/setXLength 100 cm<br>
/gate/world/geometry/setYLength 100 cm<br>
/gate/world/geometry/setZLength 100 cm<br>
/gate/world/vis/setColor red<br>
/gate/world/vis/forceWireframe<br>
/gate/world/describe<br>
# Scanner Head<br>
/gate/world/daughters/name SPECThead<br>
/gate/world/daughters/insert box<br>
/gate/SPECThead/geometry/setXLength 7. cm<br>
/gate/SPECThead/geometry/setYLength 21. cm<br>
/gate/SPECThead/geometry/setZLength 30. cm<br>
#Distance bettween SPECThead box##<br>
/gate/SPECThead/placement/setTranslation 22.0 0. 0. cm<br>
/gate/SPECThead/setMaterial Air<br>
<br>
/gate/SPECThead/placement/setRotationAxis 0 0 1<br>
/gate/SPECThead/placement/setRotationAngle 180 deg<br>
/gate/SPECThead/vis/forceWireframe<br>
<br>
<br>
# Shielding<br>
/gate/SPECThead/daughters/name shielding<br>
/gate/SPECThead/daughters/insert box<br>
/gate/shielding/geometry/setXLength 7. cm<br>
/gate/shielding/geometry/setYLength 21. cm<br>
/gate/shielding/geometry/setZLength 30. cm<br>
/gate/shielding/placement/setTranslation 0. 0. 0. cm<br>
/gate/shielding/setMaterial Lead<br>
/gate/shielding/vis/setColor grey<br>
/gate/shielding/vis/forceSolid<br>
# Collimator<br>
/gate/SPECThead/daughters/name collimator<br>
/gate/SPECThead/daughters/insert box<br>
/gate/collimator/geometry/setXLength 3. cm<br>
/gate/collimator/geometry/setYLength 19. cm<br>
/gate/collimator/geometry/setZLength 28. cm<br>
#the loction of collimator relative to y-axes##<br>
/gate/collimator/placement/setTranslation -2. 0. 0. cm<br>
/gate/collimator/setMaterial Lead<br>
/gate/collimator/vis/setColor red<br>
/gate/collimator/vis/forceWireframe<br>
/gate/collimator/describe<br>
/gate/collimator/daughters/name hole<br>
/gate/collimator/daughters/insert hexagone<br>
/gate/hole/geometry/setHeight 3. cm<br>
/gate/hole/geometry/setRadius .01 cm<br>
/gate/hole/placement/setRotationAxis 0 0 1<br>
/gate/hole/placement/setRotationAngle 90 deg<br>
/gate/hole/setMaterial Air<br>
#<br>
# Repeat the hole in an array<br>
##<br>
/gate/hole/repeaters/insert cubicArray<br>
/gate/hole/cubicArray/setRepeatNumberX 1<br>
/gate/hole/cubicArray/setRepeatNumberY 52<br>
/gate/hole/cubicArray/setRepeatNumberZ 44<br>
/gate/hole/cubicArray/setRepeatVector 0. 0.36 0.624 cm<br>
#<br>
# Repeat these holes in a linear<br>
##<br>
/gate/hole/repeaters/insert linear<br>
/gate/hole/linear/setRepeatNumber 2<br>
/gate/hole/linear/setRepeatVector 0. 0.18 0.312 cm<br>
<br>
<br>
# CRYSTAL<br>
/gate/SPECThead/daughters/name crystal<br>
/gate/SPECThead/daughters/insert box<br>
/gate/crystal/geometry/setXLength 1. cm<br>
/gate/crystal/geometry/setYLength 19. cm<br>
/gate/crystal/geometry/setZLength 28. cm<br>
/gate/crystal/placement/setTranslation 0. 0. 0. cm<br>
/gate/crystal/setMaterial NaI<br>
/gate/crystal/vis/setColor yellow<br>
<br>
# BACK-COMPARTMENT<br>
/gate/SPECThead/daughters/name compartment<br>
/gate/SPECThead/daughters/insert box<br>
/gate/compartment/geometry/setXLength 2.5 cm<br>
/gate/compartment/geometry/setYLength 19. cm<br>
/gate/compartment/geometry/setZLength 28. cm<br>
/gate/compartment/placement/setTranslation 1.75 0. 0. cm<br>
/gate/compartment/setMaterial Glass<br>
/gate/compartment/vis/setColor grey<br>
<br>
# TABLE<br>
/gate/world/daughters/name table<br>
/gate/world/daughters/insert box<br>
/gate/table/geometry/setXLength 40 cm<br>
/gate/table/geometry/setYLength 4. cm<br>
/gate/table/geometry/setZLength 40. cm<br>
/gate/table/placement/setRotationAxis 0 1 0<br>
/gate/table/placement/setRotationAngle 90 deg<br>
/gate/table/placement/setTranslation 0. -14.9 0. cm<br>
/gate/table/setMaterial Polystyrene<br>
/gate/table/vis/setColor white<br>
/gate/table/vis/forceSolid<br>
<br>
# PHANTOM<br>
/gate/world/daughters/name Phantom<br>
/gate/world/daughters/insert box<br>
/gate/Phantom/geometry/setXLength 30. cm<br>
/gate/Phantom/geometry/setYLength 30. cm<br>
/gate/Phantom/geometry/setZLength 30. cm<br>
/gate/Phantom/placement/setTranslation 0. 0. 0. cm<br>
/gate/Phantom/setMaterial Water<br>
/gate/Phantom/vis/setColor blue<br>
/gate/Phantom/vis/forceWireframe<br>
# S Y S T E M<br>
######<br>
/gate/systems/SPECThead/crystal/attach crystal<br>
/gate/systems/SPECThead/describe<br>
# S E N S I T I V E D E T E C T O R S<br>
/gate/crystal/attachCrystalSD<br>
<br>
# Phantom SD<br>
/gate/Phantom/attachPhantomSD<br>
/gate/table/attachPhantomSD<br>
/gate/compartment/attachPhantomSD<br>
/gate/shielding/attachPhantomSD<br>
/gate/SPECThead/attachPhantomSD<br>
/gate/collimator/attachPhantomSD<br>
<br>
# P H Y S I C S<br>
#####<br>
/gate/physics/addProcess PhotoElectric<br>
/gate/physics/processes/PhotoElectric/setModel StandardModel<br>
<br>
/gate/physics/addProcess Compton<br>
/gate/physics/processes/Compton/setModel PenelopeModel<br>
<br>
/gate/physics/addProcess RayleighScattering<br>
/gate/physics/processes/RayleighScattering/setModel PenelopeModel<br>
<br>
/gate/physics/addProcess ElectronIonisation<br>
/gate/physics/processes/ElectronIonisation/setModel StandardModel e-<br>
<br>
/gate/physics/addProcess Bremsstrahlung<br>
/gate/physics/processes/Bremsstrahlung/setModel StandardModel e-<br>
<br>
/gate/physics/addProcess MultipleScattering e-<br>
<br>
/gate/physics/processList Enabled<br>
/gate/physics/processList Initialized<br>
<br>
# C U T S<br>
#####<br>
/gate/physics/Gamma/SetCutInRegion SPECThead 0.1 cm<br>
/gate/physics/Electron/SetCutInRegion SPECThead 1.0 cm<br>
# Source 1<br>
/gate/source/addSource mySource_1<br>
/gate/source/mySource_1/gps/type Volume<br>
/gate/source/mySource_1/gps/shape Cylinder<br>
/gate/source/mySource_1/gps/radius 0.5 mm<br>
/gate/source/mySource_1/gps/halfz 100 mm<br>
/gate/source/mySource_1/gps/centre 0. 0. 0. cm<br>
/gate/source/mySource_1/gps/particle gamma<br>
/gate/source/mySource_1/gps/energy 140. keV<br>
<br>
# 1 MBq<br>
#/gate/source/mySource_1/setActivity 1000000 Bq<br>
/gate/source/mySource_1/setActivity 1 Bq<br>
# Emission angle: isotropic<br>
/gate/source/mySource_1/gps/angtype iso<br>
/gate/source/list<br>
#====================================================<br>
#DATA OUTPUT<br>
#===================================================<br>
/gate/output/allowNoOutput<br>
<br>
<br>
#=====================================================<br>
# START BEAMS<br>
#=====================================================<br>
<br>
<br>
/gate/random/setEngineName MersenneTwister<br>
/gate/random/setEngineSeed auto<br>
#/gate/application/setTotalNumberOfPrimaries 100000<br>
/gate/application/start<br>
<br>
<br>
<br>
<br>
#==============================================================================================<br>
# Initialisation<br>
#==============================================================================================<br>
<br>
/gate/run/initialize<br>
#==============================================================================================<br>
# Main program<br>
#==============================================================================================<br>
<br>
#/gate/output/allowNoOutput<br>
<br>
/gate/application/setTotalNumberOfPrimaries 1<br>
/gate/application/start<br>
<br>
This error appear for me<br>
***** Illegal application state </gate/source/addSource mySource_1> *****<br>
***** Batch is interrupted!! *****<br>
<br>
thanks for your help<br>
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<br>
------------------------------<br>
<br>
Message: 2<br>
Date: Thu, 23 Dec 2021 10:20:27 +0000 (UTC)<br>
From: "Konstantinos P. Chatzipapas" <<a href="mailto:konhat88@yahoo.gr" rel="noreferrer" target="_blank">konhat88@yahoo.gr</a>><br>
To: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org" rel="noreferrer" target="_blank">gate-users@lists.opengatecollaboration.org</a>>, Anes<br>
Mohammed <<a href="mailto:anes.m.s.q@gmail.com" rel="noreferrer" target="_blank">anes.m.s.q@gmail.com</a>><br>
Subject: Re: [Gate-users] addsource<br>
Message-ID: <<a href="mailto:1003764488.1333227.1640254827686@mail.yahoo.com" rel="noreferrer" target="_blank">1003764488.1333227.1640254827686@mail.yahoo.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hello Anes,<br>
A first problem with your code is that /gate/run/initialize should not be in the end. It must be before the source definition. To be accurate, before these lines: # Source 1/gate/source/addSource mySource_1<br>
<br>
Regards,Konstantinos----------------------------------------------------- Konstantinos Chatzipapas<br>
Medical Physicist, Ph.D.<br>
University of Patras<br>
<br>
<br>
Στις Τετάρτη, 22 Δεκεμβρίου 2021, 08:43:15 μ.μ. EET, ο χρήστης Anes Mohammed <<a href="mailto:anes.m.s.q@gmail.com" rel="noreferrer" target="_blank">anes.m.s.q@gmail.com</a>> έγραψε: <br>
<br>
Dear Gate User's<br>
when I implementation of the attached cod#==============================================================================================<br>
# Visualization<br>
#==============================================================================================<br>
/vis/open OGLSQt<br>
/vis/viewer/set/background black<br>
/vis/drawVolume<br>
/vis/viewer/flush<br>
/vis/viewer/set/viewpointThetaPhi 60 30<br>
/vis/viewer/zoom 10<br>
/tracking/storeTrajectory 1<br>
/vis/scene/add/trajectories<br>
/vis/scene/endOfEventAction accumulate -1<br>
/vis/scene/add/axes<br>
/gate/verbose Physic 0<br>
/gate/verbose Cuts 0<br>
/gate/verbose SD 0<br>
/gate/verbose Actions 0<br>
/gate/verbose Actor 0<br>
/gate/verbose Step 0<br>
/gate/verbose Error 1<br>
/gate/verbose Warning 0<br>
/gate/verbose Output 0<br>
/gate/verbose Beam 0<br>
/gate/verbose Volume 0<br>
/gate/verbose Image 0<br>
/gate/verbose Geometry 0<br>
/gate/verbose Core 0<br>
<br>
/run/verbose 0<br>
/event/verbose 0<br>
/tracking/verbose 0 <br>
<br>
<br>
#==============================================================================================<br>
# Materials<br>
#==============================================================================================<br>
<br>
/gate/geometry/setMaterialDatabase data/GateMaterials.db<br>
<br>
#==============================================================================================<br>
# Geometry (world)<br>
#==============================================================================================<br>
# G E O M E T R Y<br>
#####<br>
<br>
# World<br>
<br>
/gate/world/geometry/setXLength 100 cm<br>
/gate/world/geometry/setYLength 100 cm<br>
/gate/world/geometry/setZLength 100 cm<br>
/gate/world/vis/setColor red<br>
/gate/world/vis/forceWireframe<br>
/gate/world/describe<br>
# Scanner Head<br>
/gate/world/daughters/name SPECThead<br>
/gate/world/daughters/insert box<br>
/gate/SPECThead/geometry/setXLength 7. cm<br>
/gate/SPECThead/geometry/setYLength 21. cm<br>
/gate/SPECThead/geometry/setZLength 30. cm<br>
#Distance bettween SPECThead box##<br>
/gate/SPECThead/placement/setTranslation 22.0 0. 0. cm<br>
/gate/SPECThead/setMaterial Air<br>
<br>
/gate/SPECThead/placement/setRotationAxis 0 0 1<br>
/gate/SPECThead/placement/setRotationAngle 180 deg<br>
/gate/SPECThead/vis/forceWireframe<br>
<br>
<br>
# Shielding<br>
/gate/SPECThead/daughters/name shielding<br>
/gate/SPECThead/daughters/insert box<br>
/gate/shielding/geometry/setXLength 7. cm<br>
/gate/shielding/geometry/setYLength 21. cm<br>
/gate/shielding/geometry/setZLength 30. cm<br>
/gate/shielding/placement/setTranslation 0. 0. 0. cm<br>
/gate/shielding/setMaterial Lead<br>
/gate/shielding/vis/setColor grey<br>
/gate/shielding/vis/forceSolid<br>
# Collimator<br>
/gate/SPECThead/daughters/name collimator<br>
/gate/SPECThead/daughters/insert box<br>
/gate/collimator/geometry/setXLength 3. cm<br>
/gate/collimator/geometry/setYLength 19. cm<br>
/gate/collimator/geometry/setZLength 28. cm<br>
#the loction of collimator relative to y-axes##<br>
/gate/collimator/placement/setTranslation -2. 0. 0. cm<br>
/gate/collimator/setMaterial Lead<br>
/gate/collimator/vis/setColor red<br>
/gate/collimator/vis/forceWireframe<br>
/gate/collimator/describe<br>
/gate/collimator/daughters/name hole<br>
/gate/collimator/daughters/insert hexagone<br>
/gate/hole/geometry/setHeight 3. cm<br>
/gate/hole/geometry/setRadius .01 cm<br>
/gate/hole/placement/setRotationAxis 0 0 1<br>
/gate/hole/placement/setRotationAngle 90 deg<br>
/gate/hole/setMaterial Air<br>
#<br>
# Repeat the hole in an array<br>
##<br>
/gate/hole/repeaters/insert cubicArray<br>
/gate/hole/cubicArray/setRepeatNumberX 1<br>
/gate/hole/cubicArray/setRepeatNumberY 52<br>
/gate/hole/cubicArray/setRepeatNumberZ 44<br>
/gate/hole/cubicArray/setRepeatVector 0. 0.36 0.624 cm<br>
#<br>
# Repeat these holes in a linear<br>
##<br>
/gate/hole/repeaters/insert linear<br>
/gate/hole/linear/setRepeatNumber 2<br>
/gate/hole/linear/setRepeatVector 0. 0.18 0.312 cm<br>
<br>
<br>
# CRYSTAL<br>
/gate/SPECThead/daughters/name crystal<br>
/gate/SPECThead/daughters/insert box<br>
/gate/crystal/geometry/setXLength 1. cm<br>
/gate/crystal/geometry/setYLength 19. cm<br>
/gate/crystal/geometry/setZLength 28. cm<br>
/gate/crystal/placement/setTranslation 0. 0. 0. cm<br>
/gate/crystal/setMaterial NaI<br>
/gate/crystal/vis/setColor yellow<br>
<br>
# BACK-COMPARTMENT<br>
/gate/SPECThead/daughters/name compartment<br>
/gate/SPECThead/daughters/insert box<br>
/gate/compartment/geometry/setXLength 2.5 cm<br>
/gate/compartment/geometry/setYLength 19. cm<br>
/gate/compartment/geometry/setZLength 28. cm<br>
/gate/compartment/placement/setTranslation 1.75 0. 0. cm<br>
/gate/compartment/setMaterial Glass<br>
/gate/compartment/vis/setColor grey<br>
<br>
# TABLE<br>
/gate/world/daughters/name table<br>
/gate/world/daughters/insert box<br>
/gate/table/geometry/setXLength 40 cm<br>
/gate/table/geometry/setYLength 4. cm<br>
/gate/table/geometry/setZLength 40. cm<br>
/gate/table/placement/setRotationAxis 0 1 0<br>
/gate/table/placement/setRotationAngle 90 deg<br>
/gate/table/placement/setTranslation 0. -14.9 0. cm<br>
/gate/table/setMaterial Polystyrene<br>
/gate/table/vis/setColor white<br>
/gate/table/vis/forceSolid<br>
<br>
# PHANTOM<br>
/gate/world/daughters/name Phantom<br>
/gate/world/daughters/insert box<br>
/gate/Phantom/geometry/setXLength 30. cm<br>
/gate/Phantom/geometry/setYLength 30. cm<br>
/gate/Phantom/geometry/setZLength 30. cm<br>
/gate/Phantom/placement/setTranslation 0. 0. 0. cm<br>
/gate/Phantom/setMaterial Water<br>
/gate/Phantom/vis/setColor blue<br>
/gate/Phantom/vis/forceWireframe<br>
# S Y S T E M<br>
######<br>
/gate/systems/SPECThead/crystal/attach crystal<br>
/gate/systems/SPECThead/describe<br>
# S E N S I T I V E D E T E C T O R S<br>
/gate/crystal/attachCrystalSD<br>
<br>
# Phantom SD<br>
/gate/Phantom/attachPhantomSD<br>
/gate/table/attachPhantomSD<br>
/gate/compartment/attachPhantomSD<br>
/gate/shielding/attachPhantomSD<br>
/gate/SPECThead/attachPhantomSD<br>
/gate/collimator/attachPhantomSD<br>
<br>
# P H Y S I C S<br>
#####<br>
/gate/physics/addProcess PhotoElectric<br>
/gate/physics/processes/PhotoElectric/setModel StandardModel<br>
<br>
/gate/physics/addProcess Compton<br>
/gate/physics/processes/Compton/setModel PenelopeModel<br>
<br>
/gate/physics/addProcess RayleighScattering<br>
/gate/physics/processes/RayleighScattering/setModel PenelopeModel<br>
<br>
/gate/physics/addProcess ElectronIonisation<br>
/gate/physics/processes/ElectronIonisation/setModel StandardModel e-<br>
<br>
/gate/physics/addProcess Bremsstrahlung<br>
/gate/physics/processes/Bremsstrahlung/setModel StandardModel e-<br>
<br>
/gate/physics/addProcess MultipleScattering e-<br>
<br>
/gate/physics/processList Enabled<br>
/gate/physics/processList Initialized<br>
<br>
# C U T S<br>
#####<br>
/gate/physics/Gamma/SetCutInRegion SPECThead 0.1 cm<br>
/gate/physics/Electron/SetCutInRegion SPECThead 1.0 cm<br>
# Source 1<br>
/gate/source/addSource mySource_1<br>
/gate/source/mySource_1/gps/type Volume<br>
/gate/source/mySource_1/gps/shape Cylinder<br>
/gate/source/mySource_1/gps/radius 0.5 mm<br>
/gate/source/mySource_1/gps/halfz 100 mm<br>
/gate/source/mySource_1/gps/centre 0. 0. 0. cm<br>
/gate/source/mySource_1/gps/particle gamma<br>
/gate/source/mySource_1/gps/energy 140. keV<br>
<br>
# 1 MBq<br>
#/gate/source/mySource_1/setActivity 1000000 Bq<br>
/gate/source/mySource_1/setActivity 1 Bq<br>
# Emission angle: isotropic<br>
/gate/source/mySource_1/gps/angtype iso<br>
/gate/source/list<br>
#====================================================<br>
#DATA OUTPUT<br>
#===================================================<br>
/gate/output/allowNoOutput<br>
<br>
<br>
#=====================================================<br>
# START BEAMS<br>
#=====================================================<br>
<br>
<br>
/gate/random/setEngineName MersenneTwister<br>
/gate/random/setEngineSeed auto<br>
#/gate/application/setTotalNumberOfPrimaries 100000<br>
/gate/application/start<br>
<br>
<br>
<br>
<br>
#==============================================================================================<br>
# Initialisation<br>
#==============================================================================================<br>
<br>
/gate/run/initialize<br>
#==============================================================================================<br>
# Main program<br>
#==============================================================================================<br>
<br>
#/gate/output/allowNoOutput<br>
<br>
/gate/application/setTotalNumberOfPrimaries 1<br>
/gate/application/start<br>
This error appear for me<br>
***** Illegal application state </gate/source/addSource mySource_1> *****<br>
***** Batch is interrupted!! *****<br>
thanks for your help<br>
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End of Gate-users Digest, Vol 187, Issue 23<br>
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