[Gate-users] Actor type: FixedForcedDetectionActor does not exist!
Gábor Légrádi
gabor.legradi at 3dhistech.com
Sun Oct 11 12:18:44 CEST 2020
Thank you, hsl...!
Anyway, may I ask some more general questions?
1. I plan to use GATE for one definite purpose. I am to simulate microCT acquisitions with mathematical phantoms which means that I need to be able to simulate
- X-ray source with spectrum.
- Interaction of X-ray and matter below 130keV, i.e. photoelectric effect, Compton- and Raleigh-scatter.
- Detector response.
In this case what flags and settings do you recommend for GEANT4 and GATE4 build?
2. Anyway, how can I find out myself such dependencies? Meanwhile I succeeded to compile GEANT4 with the following flags:
sudo cmake -DCMAKE_INSTALL_PREFIX=/PAHT/TO/geant4/geant4-install/ -DGEANT4_INSTALL_DATA=ON -DGEANT4_USE_QT=ON -DGEANT4_USE_OPENGL_X11=ON -DGEANT4_USE_SYSTEM_EXPAT=OFF CMAKE_BUILD_TYPE=RelWithDebInfo GEANT4_BUILD_MULTITHREADED=ON GEANT4_USE_RAYTRACER_X11=ON GEANT4_USE_INVENTOR=ON GEANT4_USE_XM=ON /PATH/TO/geant4/geant4/
However, this case my GATE compilation crashes with meaningless error message. It would be really demanding to try out one-by-one which flag is really helpful in my case and which causes the crash. It is very likely, that crash is caused by some settings which are, on the other hand, absolutely useless for X-ray modelling in GATE.
Hoping that my point is clear,
Gabor
Gábor Légrádi
Product Development Manager
3DHISTECH Ltd.<https://www.3dhistech.com/>
H-1141 Budapest, Öv utca 3., HUNGARY
Jabber: gabor.legradi at 3dhistech.com<xmpp:%%Email%%>
Phone: +36 1 467-5600
Fax: +36 1 445-0920
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On Sat, Oct 10, 2020 at 11:47 AM hsl1196997465 at gmail.com <hsl1196997465 at gmail.com> wrote:
RTK is required for this function, you should install ITK with RTK ON firstly, and recompile Gate with ITK ON .
---Original---
From: "Gábor Légrádi"<gabor.legradi at 3dhistech.com<mailto:gabor.legradi at 3dhistech.com>>
Date: Sat, Oct 10, 2020 06:41 AM
To: "gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>"<gate-users at lists.opengatecollaboration.org<mailto:gate-users at lists.opengatecollaboration.org>>;
Subject: [Gate-users] Actor type: FixedForcedDetectionActor does not exist!
Dear All,
I am new to GATE. Until now, I have been playing with vGATE, on Virtual Machine. Now I am testing my newly compiled GATE on my host machine. I tried to execute a macro which runs properly on vGATE. You may find it in GateContrib Github folder: https://github.com/OpenGATE/GateContrib/tree/master/imaging/CT/fixedForcedDetectionCT .
On my host Gate can not accomplish this line:
/gate/actor/addActor FixedForcedDetectionActor ffda
Warning message:
*** WARNING *** Actor type: FixedForcedDetectionActor does not exist!
And then, naturally, ffda can not be attached and Gate stops with error:
/gate/actor/ffda/attachTo world
[G4-cerr] command not found
Any hint?
I installed the whole stuff on Ubuntu 20.04. Here are my notes about the installation:
**** GEANT4 ****
sudo apt-get update
sudo apt upgrade
sudo apt install cmake
Downloaded and unzipped: https://geant4.web.cern.ch/support/download -> GNU or Linux tar format, compressed using gzip (33.2Mb, 34833550 bytes)
[...]
cmake command:
cmake -DCMAKE_INSTALL_PREFIX=/home/lg/geant4.10.06.p02 -DGEANT4_INSTALL_DATA=ON -DGEANT4_USE_SYSTEM_EXPAT=OFF /home/lg/work/geant4.10.06.p02
make -j4
make install
**** ROOT ****
sudo apt-get install libx11-dev libxpm-dev libxft-dev libxext-dev libssl-dev (elvileg dpkg-dev cmake g++ gcc binutils már fenn vannak)
Binary loaded from here and extracted: https://root.cern/install/all_releases/ -> Release 6.22/02 - 17 Aug 2020
**** GATE ****
sudo apt install cmake-curses-gui
sudo apt-get install libxml2-dev
sudo apt-get install libc6-dev libssl-dev dpkg-dev debhelper fakeroot libxml2-dev libxslt1-dev
Downloaded and extracted: https://github.com/OpenGATE/Gate/archive/v9.0.zip
[...]
cd gate_v9.0
ccmake ../Gate-9.0-dwnld
Then I set these settings:
BUILD_TESTING: ON
CMAKE_BACKWARD_COMPATIBILITY: 2.4
CMAKE_BUILD_TYPE: Release
CMAKE_INSTALL_PREFIX:
EXECUTABLE_OUTPUT_PATH:
GATE_COMPILE_WITH_NATIVE: OFF
GATE_DOWNLOAD_BENCHMARKS_DATA: ON
GATE_USE_DAVIS: OFF
GATE_USE_ECAT7: OFF
GATE_USE_GEANT4_UIVUS: ON
GATE_USE_ITK: OFF
GATE_USE_LMF: OFF
GATE_USE_OPTICAL: ON
GATE_USE_RTK: OFF
GATE_USE_SYSTEM_CLHEP: OFF
GATE_USE_TORCH: OFF
GATE_USE_XRAYLIB: OFF
Geant4_DIR:
LIBRARY_OUTPUT_PATH:
ROOTCINT_EXECUTABLE:
g: Generate and exit
make -j4
make install
source /home/lg/root/bin/thisroot.sh
source /home/lg/geant4.10.06.p02/bin/geant4.sh
export PATH=$PATH:/home/lg/gate_v9.0/bin
Gábor Légrádi
Product Development Manager
3DHISTECH Ltd.
H-1141 Budapest, Öv utca 3., HUNGARY
Jabber: gabor.legradi at 3dhistech.com<mailto:gabor.legradi at 3dhistech.com>
Phone: +36 1 467-5600
Fax: +36 1 445-0920
_______________________________________________
Gate-users mailing list
Gate-users at lists.opengatecollaboration.org<mailto:Gate-users at lists.opengatecollaboration.org>
http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
________________________________
From: Gate-users <gate-users-bounces at lists.opengatecollaboration.org> on behalf of Gábor Légrádi <gabor.legradi at 3dhistech.com>
Sent: Saturday, October 10, 2020 12:41:34 AM
To: gate-users at lists.opengatecollaboration.org
Subject: [Gate-users] Actor type: FixedForcedDetectionActor does not exist!
Dear All,
I am new to GATE. Until now, I have been playing with vGATE, on Virtual Machine. Now I am testing my newly compiled GATE on my host machine. I tried to execute a macro which runs properly on vGATE. You may find it in GateContrib Github folder: https://github.com/OpenGATE/GateContrib/tree/master/imaging/CT/fixedForcedDetectionCT .
On my host Gate can not accomplish this line:
/gate/actor/addActor FixedForcedDetectionActor ffda
Warning message:
<!> *** WARNING *** <!> Actor type: FixedForcedDetectionActor does not exist!
And then, naturally, ffda can not be attached and Gate stops with error:
/gate/actor/ffda/attachTo world
[G4-cerr] command </gate/actor/ffda/attachTo world> not found
Any hint?
I installed the whole stuff on Ubuntu 20.04. Here are my notes about the installation:
**** GEANT4 ****
sudo apt-get update
sudo apt upgrade
sudo apt install cmake
Downloaded and unzipped: https://geant4.web.cern.ch/support/download -> GNU or Linux tar format, compressed using gzip (33.2Mb, 34833550 bytes)
[...]
cmake command:
cmake -DCMAKE_INSTALL_PREFIX=/home/lg/geant4.10.06.p02 -DGEANT4_INSTALL_DATA=ON -DGEANT4_USE_SYSTEM_EXPAT=OFF /home/lg/work/geant4.10.06.p02
make -j4
make install
**** ROOT ****
sudo apt-get install libx11-dev libxpm-dev libxft-dev libxext-dev libssl-dev (elvileg dpkg-dev cmake g++ gcc binutils már fenn vannak)
Binary loaded from here and extracted: https://root.cern/install/all_releases/ -> Release 6.22/02 - 17 Aug 2020
**** GATE ****
sudo apt install cmake-curses-gui
sudo apt-get install libxml2-dev
sudo apt-get install libc6-dev libssl-dev dpkg-dev debhelper fakeroot libxml2-dev libxslt1-dev
Downloaded and extracted: https://github.com/OpenGATE/Gate/archive/v9.0.zip
[...]
cd gate_v9.0
ccmake ../Gate-9.0-dwnld
Then I set these settings:
BUILD_TESTING: ON
CMAKE_BACKWARD_COMPATIBILITY: 2.4
CMAKE_BUILD_TYPE: Release
CMAKE_INSTALL_PREFIX: <IT WAS SET PROPERLY>
EXECUTABLE_OUTPUT_PATH: <NONE>
GATE_COMPILE_WITH_NATIVE: OFF
GATE_DOWNLOAD_BENCHMARKS_DATA: ON
GATE_USE_DAVIS: OFF
GATE_USE_ECAT7: OFF
GATE_USE_GEANT4_UIVUS: ON
GATE_USE_ITK: OFF
GATE_USE_LMF: OFF
GATE_USE_OPTICAL: ON
GATE_USE_RTK: OFF
GATE_USE_SYSTEM_CLHEP: OFF
GATE_USE_TORCH: OFF
GATE_USE_XRAYLIB: OFF
Geant4_DIR: <IT WAS SET PROPERLY>
LIBRARY_OUTPUT_PATH: <NONE>
ROOTCINT_EXECUTABLE: <IT WAS SET PROPERLY>
g: Generate and exit
make -j4
make install
source /home/lg/root/bin/thisroot.sh
source /home/lg/geant4.10.06.p02/bin/geant4.sh
export PATH=$PATH:/home/lg/gate_v9.0/bin
Gábor Légrádi
Product Development Manager
3DHISTECH Ltd.
H-1141 Budapest, Öv utca 3., HUNGARY
Jabber: gabor.legradi at 3dhistech.com
Phone: +36 1 467-5600
Fax: +36 1 445-0920
This e-mail may contain confidential and/or privileged information and should only be read by those persons to whom it is addressed. If you are not the intended recipient or have received this e-mail in error, please notify the sender (3DHISTECH Ltd., info at 3dhistech.com) immediately and erase this e-mail from your system. If you are not the intended recipient you are hereby notified that any form of copying, dissemination, disclosure, modification, distribution and/or publication or any action taken in reliance on this email is prohibited and may be unlawful. Moreover, to the extent that a non-disclosure agreement exists between 3DHISTECH Ltd. and you, the recipient, the contents of this email and any attachments hereto are governed by the terms of said non-disclosure agreement and are considered confidential and proprietary to 3DHISTECH Ltd. as defined by such agreement. Any form of copying, dissemination, disclosure, modification, distribution and/or publication of this e-mail message without preliminary permission is strictly prohibited.
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