[Gate-users] GATE Cluster Running with HTCondor

[Zhengzhi Liu]

Hi Xinjie,

Has it thrown any error message? I also followed the instruction (the
second link in your email) step by step. Although I also had some minor
issues at the very beginning, I got it to work very well. To me,  the only
thing I need to add to condor.script to make it work is adding
"getenv=true" to the script.

Here are my suggestions to debug:


   - First, make sure that your GATE code runs correctly in non-Server mode
   and check the output;
   - Second, make sure that Condor runs normally.
   - Third, try to run your GATE code with condor.


If you have further questions, please let me know.

Good luck,

Zhengzhi

On Mon, Mar 30, 2020 at 7:09 AM Xinjie Cao <xinjie.cao at stonybrook.edu>
wrote:

> Dear all,
>
> I am using HTCondor platform for GATE cluster running with the following
> guides:
> 1.
> http://www.opengatecollaboration.org/Materials2015/PracticalExercises2015/RunningGATECluster
> 2.
> https://opengate.readthedocs.io/en/latest/how_to_use_gate_on_a_cluster.html
>
> I can run every step but just always get wrong output with 0 byte .out
> file. I am a rookie to GATE cluster running, any reply will be highly
> appreciated. Thank you!
>
> Best,
>
> --
> *....................................................*
> *Xinjie Cao*
> *M.E. / Ph.D. student*
> *Research Project Assistant*
> *Department of Electrical and Computer Engineering & Radiology *
> *Novel Medical Imaging Technologies Lab*
> *Health Science Center Level 8*
> *Stony Brook, NY 11794-8460 *
> *Tel: +1 (631)202-9445*
> you.stonybrook.edu/goldan/people/
> *email: **xinjie.cao at stonybroo*k.edu <xinjie.cao at stonybrook.edu>
>
>
> *....................................................*
> It is prohibited to distribute or publish the files attached to any other
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