[Gate-users] GATE Cluster Running with HTCondor

[Xinjie Cao]

Dear Lana,

Thanks for your email. I tried that before but it didn't work actually.
Considering that I am using personal Condor, situation might be a little
different with you guys using cluster computers. But I finally figured it
out last night by fixing the database path problem and made all done now.
Thank you again for your response again!

Warm regards,

On Wed, Apr 1, 2020 at 7:30 PM Lana Beck <lana.beck at bristol.ac.uk> wrote:

> Dear Xinjie,
>
> Here is an example of my condor script. It is tailored to our computing
> system so I'm not saying this is exactly what you should do. Perhaps you
> need the 'transfer_input_files' line to transfer the required file to
> your worker node? You can also see that I transfer a .placements file for
> placing geometrical objects and another file which has a script which
> transfers the created root files to the hadoop file system for storage when
> the job finishes.
>
> Best wishes,
> Lana
>
> universe = vanilla
> getenv = true
> Executable     = /software/lbk/gate/GateInstall/bin/Gate
> transfer_input_files = transfers/transfer_script_SmallExample,
> GateMaterials.db, Materials.xml, data/peaks.placements
> request_cpus = 1
> request_memory = 120
> when_to_transfer_output = on_exit_or_evict
> requirements=(OpSysAndVer == "SL6")
> +PostCmd        = "transfer_script_SmallExample"
>
>
> Arguments      =
> /users/lbk/Radiotherapy/gateSplitDir/.Gate//SmallExample1//SmallExample1.mac
> Output         = /storage/lbk/SmallExample/SmallExample1.out
> Error          = /storage/lbk/SmallExample/SmallExample1.err
> Log            = /storage/lbk/SmallExample/SmallExample1.log
> Queue
>
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users



-- 
*....................................................*
*Xinjie Cao*
*M.E. / Ph.D. student*
*Research Project Assistant*
*Department of Electrical and Computer Engineering & Radiology *
*Novel Medical Imaging Technologies Lab*
*Health Science Center Level 8*
*Stony Brook, NY 11794-8460 *
*Tel: +1 (631)202-9445*
you.stonybrook.edu/goldan/people/
*email: **xinjie.cao at stonybroo*k.edu <xinjie.cao at stonybrook.edu>


*....................................................*
It is prohibited to distribute or publish the files attached to any other
people unless you get permission from the writer himself. All rights
reserved.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20200401/c842761f/attachment.html>