[Gate-users] Gate Example Question

[David Sarrut]

Hello,

great !

For viewer mhd/raw images, see for example :
https://www.slicer.org/
https://www.creatis.insa-lyon.fr/rio/vv
http://www.itksnap.org
https://imagej.nih.gov/ij/
etc ...

For the other examples python notebook :
https://davidsarrut.pages.in2p3.fr/gate-exercices-site/ and the source code
: https://gitlab.in2p3.fr/davidsarrut/gate-exercices

David
PS: please use the mailing list so that other users can benefit from your
experience

On Tue, Jul 30, 2019 at 11:54 PM Kim, Changju <changju.kim.12 at ucl.ac.uk>
wrote:

> Dear Dr Sarrut,
>
> Thank you again for your kind reply.
> I found I made a mistake and I can execute the examples perfectly.
>
> As you award of that I am a newbie of Gate, it could be stupid question;
> how can I open the files such as .mhd and .raw files.
>
> In addition, when I opened “dose map analysis.ipynb”; it says “other
> examples of exercises” including plot a dept dose profile with interactive
> line coordinate, etc on the bottom of the notebook.
> When could I find them as well?
>
> It would really appreciate and helpful for my future researches.
>
> Please let me know and really thank you again.
>
> Best wishes,
>
> Changju
>
> On 30 Jul 2019, at 06:31, David Sarrut <David.Sarrut at creatis.insa-lyon.fr>
> wrote:
>
> Hello,
>
> what are the sizes of the images once downloaded on your disk ? Did you
> manage to open them with a viewer ?
>
> another question: what Gate version do you use ?
>
> best,
> David
>
> On Mon, Jul 29, 2019 at 1:54 PM Kim, Changju <changju.kim.12 at ucl.ac.uk>
> wrote:
>
>> Dear Dr Sarrut,
>>
>> Thank you for your kind reply; unfortunately, it doesn’t work either.
>>
>> I’ve followed the instructions of readme but still the same.
>>
>> Please let me know if I have another option to execute the examples.
>>
>> Best wishes,
>>
>> Changju
>>
>> On 26 Jul 2019, at 15:04, David Sarrut <David.Sarrut at creatis.insa-lyon.fr>
>> wrote:
>>
>> Hello Kim !
>>
>> probably due to the image that were not downloaded correctly: did you
>> init git-lfs *before* cloning the repository
>> https://github.com/OpenGATE/GateContrib ? (Instructions are on the
>> readme).
>>
>> Please check the image and tell me if they are good or not
>>
>> thanks,
>> David
>> PS: please use the gate mailing list
>>
>> On Thu, Jul 25, 2019 at 8:34 PM Kim, Changju <changju.kim.12 at ucl.ac.uk>
>> wrote:
>>
>>> Dear David Sarrut,
>>>
>>> Good afternoon from London, the UK.
>>>
>>> This email finds you are doing well so far.
>>>
>>> I am a new user of GATE, and I do research about the proton therapy
>>> field.
>>>
>>> I would like to try to do Examples such as Example2 and Example3;
>>> however, I had this error message on my screen whenever I executed their
>>> .mac file.
>>>
>>> Please find the .txt file which I copy the error message.
>>>
>>> Would you help me what should I have to look up and change?
>>>
>>> It would be really appreciated with your help for my future research.
>>>
>>>
>>> I look forward to hearing from you.
>>>
>>>
>>>
>>> Best wishes,
>>>
>>>
>>> Changju Kim
>>>
>>>
>>>
>>> MRes Student
>>>
>>> Dept. Medical Physics & Biomedical Engineering
>>>
>>>
>>>
>>>
>>>
>>
>>
>> --
>> David Sarrut, Phd
>> Directeur de recherche CNRS
>> CREATIS, UMR CNRS 5220, Inserm U1206
>> Centre de lutte contre le cancer Léon Bérard
>> 28 rue Laënnec, 69373 Lyon cedex 08
>> Tel : 04 78 78 51 51 / 06 74 72 05 42
>> http://www.creatis.insa-lyon.fr/~dsarrut
>> <https://eur01.safelinks.protection.outlook.com/?url=http:%2F%2Fwww.creatis.insa-lyon.fr%2F~dsarrut&data=02%7C01%7C%7C0c4a2f72d85d4a7b4af008d714af2ecd%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C637000614950698014&sdata=utShht2emwWcaVBJdjyWsL6%2FMRU%2F8nxwAMmv1k8rGuc%3D&reserved=0>
>> _________________________________
>>  "2 + 2 = 5,  for extremely large values of 2"
>> _________________________________
>>
>>
>
> --
> David Sarrut, Phd
> Directeur de recherche CNRS
> CREATIS, UMR CNRS 5220, Inserm U1206
> Centre de lutte contre le cancer Léon Bérard
> 28 rue Laënnec, 69373 Lyon cedex 08
> Tel : 04 78 78 51 51 / 06 74 72 05 42
> http://www.creatis.insa-lyon.fr/~dsarrut
> <https://eur01.safelinks.protection.outlook.com/?url=http:%2F%2Fwww.creatis.insa-lyon.fr%2F~dsarrut&data=02%7C01%7C%7C0c4a2f72d85d4a7b4af008d714af2ecd%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C637000614950708008&sdata=DiiK%2B6m91dMjZaRZs%2BJ%2BUBBh02PpTe4CQ7U%2B6%2BfMWu8%3D&reserved=0>
> _________________________________
>  "2 + 2 = 5,  for extremely large values of 2"
> _________________________________
>
>

-- 
David Sarrut, Phd
Directeur de recherche CNRS
CREATIS, UMR CNRS 5220, Inserm U1206
Centre de lutte contre le cancer Léon Bérard
28 rue Laënnec, 69373 Lyon cedex 08
Tel : 04 78 78 51 51 / 06 74 72 05 42
http://www.creatis.insa-lyon.fr/~dsarrut
_________________________________
 "2 + 2 = 5,  for extremely large values of 2"
_________________________________
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