[Gate-users] Gate-users Digest, Vol 128, Issue 25
Chekdob Bagdob
checkdobbagdob at gmail.com
Fri Jan 27 06:32:58 CET 2017
Thank you very much David. I have completed installation successfully.
On Wed, Jan 25, 2017 at 3:24 PM, <
gate-users-request at lists.opengatecollaboration.org> wrote:
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> Today's Topics:
>
> 1. Error in installing GATE_v7.2 on Ubuntu_16.04_LTS (Chekdob Bagdob)
> 2. Re: Error in installing GATE_v7.2 on Ubuntu_16.04_LTS
> (David Boersma)
> 3. Re: Error in installing GATE_v7.2 on Ubuntu_16.04_LTS
> (Dr.D.Nikolopoulos)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 25 Jan 2017 10:20:42 +0530
> From: Chekdob Bagdob <checkdobbagdob at gmail.com>
> To: gate-users at lists.opengatecollaboration.org
> Subject: [Gate-users] Error in installing GATE_v7.2 on
> Ubuntu_16.04_LTS
> Message-ID:
> <CAD_bN0i8XA-PdjevjpVjKOGPBUZjvgSUXm4kpW1xT
> wESPJ1+2Q at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear GATE users,
>
>
> Recently I am trying to install GATE_v7.2 on my
> Ubuntu_16.04_LTS. I choose to follow the wiki page (
> http://wiki.opengatecollaboration.org/index.php/Compilation_
> Instructions_V7.2).
> Here under I have listed series of task that I performed:
>
> 1. First I go to package requirement page and installed packages listed
> for Ubuntu_16.04_LTS.
>
> 2. Then I installed CLHEP 2.3.1.1 following the steps explained in
> compilation wiki page (
> http://wiki.opengatecollaboration.org/index.php/Compilation_
> Instructions_V7.2
> ).
>
> 3. Then I installed binary version of root_v6.08.
>
> 4. Then I installed Geant4_v10.1 with patch 02. Although for GATE_v7.2
> we need Geant4_v10.2 but in installation guide page (
> http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2)
> they mentioned that GATE_v7.2 is backward compatible with Geant4_v10.1 with
> patch 02.
>
> 5. Finally I started installing GATE_v7.2. But after successively
> running ccmake command, in make -j4 step I get the error like this
>
>
> error: 'kCanRebin' is not a member of 'TH1'
> pFrag -> SetBit (TH1: kCanRebin)
>
>
> So, I tried to google the problem I get a suggestion that I should install
> root_v5.34. But there is no binary version for Ubuntu_v16.04_LTS. So I
> downloaded source version and installed it through 'environment driven
> build method' explained in INSTALL file. But same error remains
> ('kCanRebin').
>
> Some useful information:
>
> cmake --version >> 3.5.1
> gcc --version >> 5.4.0
> c++ --version >> 5.4.0
> Processor Intel Core i5-6402P CPU @ 2.80 GHz * 4
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>
> ------------------------------
>
> Message: 2
> Date: Wed, 25 Jan 2017 10:05:59 +0100
> From: David Boersma <david.boersma at physics.uu.se>
> To: <gate-users at lists.opengatecollaboration.org>
> Subject: Re: [Gate-users] Error in installing GATE_v7.2 on
> Ubuntu_16.04_LTS
> Message-ID: <bd8ba18c-6f76-2541-d795-866de9a69f8a at physics.uu.se>
> Content-Type: text/plain; charset="utf-8"; format=flowed
>
> Hi Chekdob Bagdob,
>
> Yes, this 'kCanRebin" error is a known issue and it's fixed in the
> upcoming release. Installing ROOT 5.34 should have solved it for you. I
> suspect that you installed 5.34 in parallel to 6.08, and that for some
> reason the build system is still "seeing" 6.08. If you grep for
> ROOT_CONFIG_EXECUTABLE in CMakeCache.txt (in your build directory) then
> it should become clear if that is indeed the case. Make sure to run
> "source /path/to/root/5.34/bin/thisroot.sh" before running cmake, and
> sometimes you also need to delete the CMakeCache.txt file to make sure
> that cmake actually notices the change in your environment.
>
> (Note: if you keep both ROOT versions installed, and you try to *run*
> Gate, maybe in fresh new shell, or after a reboot, then you should also
> make sure that the shell environment "sees" the correct ROOT version.
> Building with one version and running with another either does not work
> at all , or leads to very confusing crashes.)
>
> David
>
> Den 25/01/2017 kl. 05:50, skrev Chekdob Bagdob:
> > Dear GATE users,
> >
> >
> > Recently I am trying to install GATE_v7.2 on my
> > Ubuntu_16.04_LTS. I choose to follow the wiki page
> > (http://wiki.opengatecollaboration.org/index.php/Compilation_
> Instructions_V7.2).
> > Here under I have listed series of task that I performed:
> >
> > 1. First I go to package requirement page and installed packages
> > listed for Ubuntu_16.04_LTS.
> >
> > 2. Then I installed CLHEP 2.3.1.1 following the steps explained in
> > compilation wiki page
> > (http://wiki.opengatecollaboration.org/index.php/Compilation_
> Instructions_V7.2).
> >
> > 3. Then I installed binary version of root_v6.08.
> >
> > 4. Then I installed Geant4_v10.1 with patch 02. Although for
> > GATE_v7.2 we need Geant4_v10.2 but in installation guide page
> > (http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2)
> they
> > mentioned that GATE_v7.2 is backward compatible with Geant4_v10.1 with
> > patch 02.
> >
> > 5. Finally I started installing GATE_v7.2. But after successively
> > running ccmake command, in make -j4 step I get the error like this
> >
> >
> > error: 'kCanRebin' is not a member of 'TH1'
> > pFrag -> SetBit (TH1: kCanRebin)
> >
> >
> > So, I tried to google the problem I get a suggestion that I should
> > install root_v5.34. But there is no binary version for
> > Ubuntu_v16.04_LTS. So I downloaded source version and installed it
> > through 'environment driven build method' explained in INSTALL file. But
> > same error remains ('kCanRebin').
> >
> > Some useful information:
> >
> > cmake --version >> 3.5.1
> > gcc --version >> 5.4.0
> > c++ --version >> 5.4.0
> > Processor Intel Core i5-6402P CPU @ 2.80 GHz * 4
> >
> >
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> >
>
>
> ------------------------------
>
> Message: 3
> Date: Wed, 25 Jan 2017 11:50:16 +0200
> From: Dr.D.Nikolopoulos <dniko at teipir.gr>
> To: <gate-users at lists.opengatecollaboration.org>
> Subject: Re: [Gate-users] Error in installing GATE_v7.2 on
> Ubuntu_16.04_LTS
> Message-ID: <588874D8.3090600 at teipir.gr>
> Content-Type: text/plain; charset="utf-8"
>
> Please try these scripts that we have prepared here in PUAS (Greece).
> There might need some minor scripting, or manually run the commands. I
> hope that it assists.
>
> --
> Dr.Dimitrios Nikolopoulos
> Environmental-Health Physics
>
> Associate Professor
> _________________________________________________________
> Piraeus University of Applied Sciences,
> Department of Electronic Computer Systems Engineering,
> Petrou Ralli & Thivon 250, GR122 44, Aigaleo, Greece
>
> e-mail : dniko at teipir.gr
> NikolopoulosDimitrios at gmail.com
>
> Mobile : +0030-6977-208318
> Home : +0030-213-0308432
> Tel (Office): +0030-210-5381560
> Fax (Office): +0030-210-5381436
>
> Skype : dr.dimitrios.nikolopoulos
> assos.prof.dimitriosnikolopoulos
>
> Internet : http://env-hum-comp-res.daidalos.teipir.gr/
> url-1 : http://www.researchers.gr/el/node/71649
> url-2 : https://www.researchgate.net/profile/
> Dimitrios_Nikolopoulos6?ev=hdr_xprf
> _________________________________________________________
>
> On 01/25/2017 06:50 AM, Chekdob Bagdob wrote:
> > Dear GATE users,
> >
> >
> > Recently I am trying to install GATE_v7.2 on my
> > Ubuntu_16.04_LTS. I choose to follow the wiki page
> > (http://wiki.opengatecollaboration.org/index.php/Compilation_
> Instructions_V7.2).
> > Here under I have listed series of task that I performed:
> >
> > 1. First I go to package requirement page and installed packages
> > listed for Ubuntu_16.04_LTS.
> >
> > 2. Then I installed CLHEP 2.3.1.1 following the steps explained in
> > compilation wiki page
> > (http://wiki.opengatecollaboration.org/index.php/Compilation_
> Instructions_V7.2).
> >
> > 3. Then I installed binary version of root_v6.08.
> >
> > 4. Then I installed Geant4_v10.1 with patch 02. Although for
> > GATE_v7.2 we need Geant4_v10.2 but in installation guide page
> > (http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2
> )
> > they mentioned that GATE_v7.2 is backward compatible with Geant4_v10.1
> > with patch 02.
> >
> > 5. Finally I started installing GATE_v7.2. But after successively
> > running ccmake command, in make -j4 step I get the error like this
> >
> >
> > error: 'kCanRebin' is not a member of 'TH1'
> > pFrag -> SetBit (TH1: kCanRebin)
> >
> >
> > So, I tried to google the problem I get a suggestion that I should
> > install root_v5.34. But there is no binary version for
> > Ubuntu_v16.04_LTS. So I downloaded source version and installed it
> > through 'environment driven build method' explained in INSTALL file.
> > But same error remains ('kCanRebin').
> >
> > Some useful information:
> >
> > cmake --version >> 3.5.1
> > gcc --version >> 5.4.0
> > c++ --version >> 5.4.0
> > Processor Intel Core i5-6402P CPU @ 2.80 GHz * 4
> >
> >
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
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