<div dir="ltr">Thank you very much David. I have completed installation successfully. </div><div class="gmail_extra"> <div class="gmail_quote">On Wed, Jan 25, 2017 at 3:24 PM, <<a href="mailto:gate-users-request@lists.opengatecollaboration.org" target="_blank">gate-users-request@lists.opengatecollaboration.org</a>> wrote: <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send Gate-users mailing list submissions to <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a> To subscribe or unsubscribe via the World Wide Web, visit <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> or, via email, send a message with subject or body 'help' to <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a> You can reach the person managing the list at <a href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a> When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..." Today's Topics: 1. Error in installing GATE_v7.2 on Ubuntu_16.04_LTS (Chekdob Bagdob) 2. Re: Error in installing GATE_v7.2 on Ubuntu_16.04_LTS (David Boersma) 3. Re: Error in installing GATE_v7.2 on Ubuntu_16.04_LTS (Dr.D.Nikolopoulos) ---------------------------------------------------------------------- Message: 1 Date: Wed, 25 Jan 2017 10:20:42 +0530 From: Chekdob Bagdob <<a href="mailto:checkdobbagdob@gmail.com">checkdobbagdob@gmail.com</a>> To: <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a> Subject: [Gate-users] Error in installing GATE_v7.2 on Ubuntu_16.04_LTS Message-ID: <<a href="mailto:CAD_bN0i8XA-PdjevjpVjKOGPBUZjvgSUXm4kpW1xTwESPJ1%2B2Q@mail.gmail.com">CAD_bN0i8XA-PdjevjpVjKOGPBUZjvgSUXm4kpW1xTwESPJ1+2Q@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Dear GATE users, Recently I am trying to install GATE_v7.2 on my Ubuntu_16.04_LTS. I choose to follow the wiki page ( <a href="http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2</a>). Here under I have listed series of task that I performed: 1. First I go to package requirement page and installed packages listed for Ubuntu_16.04_LTS. 2. Then I installed CLHEP 2.3.1.1 following the steps explained in compilation wiki page ( <a href="http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2</a> ). 3. Then I installed binary version of root_v6.08. 4. Then I installed Geant4_v10.1 with patch 02. Although for GATE_v7.2 we need Geant4_v10.2 but in installation guide page ( <a href="http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2</a>) they mentioned that GATE_v7.2 is backward compatible with Geant4_v10.1 with patch 02. 5. Finally I started installing GATE_v7.2. But after successively running ccmake command, in make -j4 step I get the error like this error: 'kCanRebin' is not a member of 'TH1' pFrag -> SetBit (TH1: kCanRebin) So, I tried to google the problem I get a suggestion that I should install root_v5.34. But there is no binary version for Ubuntu_v16.04_LTS. So I downloaded source version and installed it through 'environment driven build method' explained in INSTALL file. But same error remains ('kCanRebin'). Some useful information: cmake --version >> 3.5.1 gcc --version >> 5.4.0 c++ --version >> 5.4.0 Processor Intel Core i5-6402P CPU @ 2.80 GHz * 4 -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20170125/ec46dcc6/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20170125/ec46dcc6/attachment-0001.html</a>> ------------------------------ Message: 2 Date: Wed, 25 Jan 2017 10:05:59 +0100 From: David Boersma <<a href="mailto:david.boersma@physics.uu.se">david.boersma@physics.uu.se</a>> To: <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] Error in installing GATE_v7.2 on Ubuntu_16.04_LTS Message-ID: <<a href="mailto:bd8ba18c-6f76-2541-d795-866de9a69f8a@physics.uu.se">bd8ba18c-6f76-2541-d795-866de9a69f8a@physics.uu.se</a>> Content-Type: text/plain; charset="utf-8"; format=flowed Hi Chekdob Bagdob, Yes, this 'kCanRebin" error is a known issue and it's fixed in the upcoming release. Installing ROOT 5.34 should have solved it for you. I suspect that you installed 5.34 in parallel to 6.08, and that for some reason the build system is still "seeing" 6.08. If you grep for ROOT_CONFIG_EXECUTABLE in CMakeCache.txt (in your build directory) then it should become clear if that is indeed the case. Make sure to run "source /path/to/root/5.34/bin/thisroot.sh" before running cmake, and sometimes you also need to delete the CMakeCache.txt file to make sure that cmake actually notices the change in your environment. (Note: if you keep both ROOT versions installed, and you try to *run* Gate, maybe in fresh new shell, or after a reboot, then you should also make sure that the shell environment "sees" the correct ROOT version. Building with one version and running with another either does not work at all , or leads to very confusing crashes.) David Den 25/01/2017 kl. 05:50, skrev Chekdob Bagdob: > Dear GATE users, > > > Recently I am trying to install GATE_v7.2 on my > Ubuntu_16.04_LTS. I choose to follow the wiki page > (<a href="http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2</a>). > Here under I have listed series of task that I performed: > > 1. First I go to package requirement page and installed packages > listed for Ubuntu_16.04_LTS. > > 2. Then I installed CLHEP 2.3.1.1 following the steps explained in > compilation wiki page > (<a href="http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2</a>). > > 3. Then I installed binary version of root_v6.08. > > 4. Then I installed Geant4_v10.1 with patch 02. Although for > GATE_v7.2 we need Geant4_v10.2 but in installation guide page > (<a href="http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2</a>) they > mentioned that GATE_v7.2 is backward compatible with Geant4_v10.1 with > patch 02. > > 5. Finally I started installing GATE_v7.2. But after successively > running ccmake command, in make -j4 step I get the error like this > > > error: 'kCanRebin' is not a member of 'TH1' > pFrag -> SetBit (TH1: kCanRebin) > > > So, I tried to google the problem I get a suggestion that I should > install root_v5.34. But there is no binary version for > Ubuntu_v16.04_LTS. So I downloaded source version and installed it > through 'environment driven build method' explained in INSTALL file. But > same error remains ('kCanRebin'). > > Some useful information: > > cmake --version >> 3.5.1 > gcc --version >> 5.4.0 > c++ --version >> 5.4.0 > Processor Intel Core i5-6402P CPU @ 2.80 GHz * 4 > > > _______________________________________________ > Gate-users mailing list > <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> > ------------------------------ Message: 3 Date: Wed, 25 Jan 2017 11:50:16 +0200 From: Dr.D.Nikolopoulos <<a href="mailto:dniko@teipir.gr">dniko@teipir.gr</a>> To: <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] Error in installing GATE_v7.2 on Ubuntu_16.04_LTS Message-ID: <<a href="mailto:588874D8.3090600@teipir.gr">588874D8.3090600@teipir.gr</a>> Content-Type: text/plain; charset="utf-8" Please try these scripts that we have prepared here in PUAS (Greece). There might need some minor scripting, or manually run the commands. I hope that it assists. -- Dr.Dimitrios Nikolopoulos Environmental-Health Physics Associate Professor _________________________________________________________ Piraeus University of Applied Sciences, Department of Electronic Computer Systems Engineering, Petrou Ralli & Thivon 250, GR122 44, Aigaleo, Greece e-mail : <a href="mailto:dniko@teipir.gr">dniko@teipir.gr</a> <a href="mailto:NikolopoulosDimitrios@gmail.com">NikolopoulosDimitrios@gmail.com</a> Mobile : +0030-6977-208318 Home : +0030-213-0308432 Tel (Office): +0030-210-5381560 Fax (Office): +0030-210-5381436 Skype : dr.dimitrios.nikolopoulos assos.prof.dimitriosnikolopoulos Internet : <a href="http://env-hum-comp-res.daidalos.teipir.gr/" rel="noreferrer" target="_blank">http://env-hum-comp-res.daidalos.teipir.gr/</a> url-1 : <a href="http://www.researchers.gr/el/node/71649" rel="noreferrer" target="_blank">http://www.researchers.gr/el/node/71649</a> url-2 : <a href="https://www.researchgate.net/profile/" rel="noreferrer" target="_blank">https://www.researchgate.net/profile/</a> Dimitrios_Nikolopoulos6?ev=hdr_xprf _________________________________________________________ On 01/25/2017 06:50 AM, Chekdob Bagdob wrote: > Dear GATE users, > > > Recently I am trying to install GATE_v7.2 on my > Ubuntu_16.04_LTS. I choose to follow the wiki page > (<a href="http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2</a>). > Here under I have listed series of task that I performed: > > 1. First I go to package requirement page and installed packages > listed for Ubuntu_16.04_LTS. > > 2. Then I installed CLHEP 2.3.1.1 following the steps explained in > compilation wiki page > (<a href="http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Compilation_Instructions_V7.2</a>). > > 3. Then I installed binary version of root_v6.08. > > 4. Then I installed Geant4_v10.1 with patch 02. Although for > GATE_v7.2 we need Geant4_v10.2 but in installation guide page > (<a href="http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2" rel="noreferrer" target="_blank">http://wiki.opengatecollaboration.org/index.php/Installation_Guide_V7.2</a>) > they mentioned that GATE_v7.2 is backward compatible with Geant4_v10.1 > with patch 02. > > 5. Finally I started installing GATE_v7.2. But after successively > running ccmake command, in make -j4 step I get the error like this > > > error: 'kCanRebin' is not a member of 'TH1' > pFrag -> SetBit (TH1: kCanRebin) > > > So, I tried to google the problem I get a suggestion that I should > install root_v5.34. But there is no binary version for > Ubuntu_v16.04_LTS. So I downloaded source version and installed it > through 'environment driven build method' explained in INSTALL file. > But same error remains ('kCanRebin'). > > Some useful information: > > cmake --version >> 3.5.1 > gcc --version >> 5.4.0 > c++ --version >> 5.4.0 > Processor Intel Core i5-6402P CPU @ 2.80 GHz * 4 > > > _______________________________________________ > Gate-users mailing list > <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> -------------- next part -------------- An HTML attachment was scrubbed... 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