[Gate-users] Convert LMF output into projection

[Hanieh Jozi]

Dear Uwe,
thanks for your guidance.
I want to convert lmf into projection but your guidance was about root format. I have simulated a cylindrical PET that is Siemens biograph 6
and as you know it's LMF output  that can't be supported in STIR for reconstruction. So, I decided to convert lmf into projection then implement it in STIR.
my question is : how I can convert LMF TO projection?
Furthermore you said that is easy to use MATLAB, Could you please let me know about converting?
thanks a lot
Hanieh

Envoyé de mon iPhone

> Le 20 févr. 2017 à 12:04, Pietrzyk, Uwe <u.pietrzyk at fz-juelich.de> a écrit :
> 
> 
> Hello Hanieh Jozi,
> 
> did you consider to use the program
> 
> Bin_GATE_v1.0.c,
> 
> which you can also find inn the GATE-Web-Site? 
> 
> http://www.opengatecollaboration.org/STIR
> (see also attached file)
> 
> This allows you to bin events (or coincidences)  stored in a
> root file to projection data , which can than be reconstructed
> with STIR.
> 
> If you are simulating a gamma camera, you could use the
> projection files and reconstruct those directly.
> See the EDUGATE example “SPECT_to_Reco_Release_2014”.
> 
> It does not use math lab but IDL/GDL and it should be easy to 
> convert to mathlab!
> 
> I hope this helps
> 
> Kind regards,
> 
> Uwe Pietrzyk
> 
> <Bin_GATE_v1.0.c>
> 
> 
> /----------------------------------------------------------------------
> Prof. Dr. Uwe Pietrzyk
> Diplom-Physiker
> Institut für Neurowissenschaften und Medizin / INM-4
> Forschungszentrum Jülich GmbH
> 52425 Jülich
> Tel: +49-2461-61 4763
> Fax: +49-2461-61 2820
> Mobil: +49-162-103-4871
> eMail: U.Pietrzyk at fz-juelich.de
> http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html
> &
> Bergische Universität Wuppertal
> Fakultät für Mathematik und Naturwissenschaften
> Büro:  D.08.01
> Gaußstr. 20
> 42097 Wuppertal
> Tel: +49-(0)202-439-3523
> Fax: +49-(0)202-439-2811
> eMail: Uwe.Pietrzyk at uni-wuppertal.de
> http://www.medizinphysik.uni-wuppertal.de
> ----------------------------------------------------------------------/
> 
>> On 20 Feb 2017, at 04:10, Hanieh Jozi <hanieh_jozi69 at yahoo.com> wrote:
>> 
>> Dear GATE-users,
>> 
>> I need to convert list mode data from GATE into projection data and I know LMF support in STIR has never worked yet.
>> In my opinion ,it's a good idea to do it by MATLAB means : convert lmf data (.css) into projection by MATLAB then l use it for STIR.
>> Has anyone succeed?!
>> I would be very grateful for any help you could provide.
>> 
>> 
>> Hanieh Jozi, M.S student |
>> Biomedical radiation Engineer |
>> cheers,
>> 
>> Envoyé de mon iPhone
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20170221/e9ca1eca/attachment.html>