[Gate-users] * Break * segmentation violation - Gate8

Thu Apr 13 11:19:45 CEST 2017

Hi all,

I am trying to install Gate-8, but I am facing a problem "
**** Break *** segmentation violation*".
All the installation process is successful (no error).

I am using Ubuntu 16.04, Root-6.08/00, g++-5.4, gcc-5.4, CLHEP 2.3.1.1,
Geant4-10.02.03.

I searched on Internet and some people related the problem with ROOT, in
this case I ran ROOT from binaries and from complete source installation,
but always is the same, Gate output is:

**** Break *** segmentation
violation===========================================================There
was a crash.This is the entire stack trace of all
threads:===========================================================#0
0x00007f7995c654ca in __GI___waitpid (pid=2062,
stat_loc=stat_locentry=0x7ffddcaf5740, options=optionsentry=0) at
../sysdeps/unix/sysv/linux/waitpid.c:29#1  0x00007f7995bdefbb in do_system
(line=<optimized out>) at ../sysdeps/posix/system.c:148#2
0x00007f799c94aab4 in TUnixSystem::Exec (shellcmd=<optimized out>,
this=0x26c52b0) at
/home/simu/Programas/Root/root3/root-6.08.00/core/unix/src/TUnixSystem.cxx:2116#3
TUnixSystem::StackTrace (this=0x26c52b0) at
/home/simu/Programas/Root/root3/root-6.08.00/core/unix/src/TUnixSystem.cxx:2403#4
0x00007f799c94d40c in TUnixSystem::DispatchSignals (this=0x26c52b0,
sig=kSigSegmentationViolation) at
/home/simu/Programas/Root/root3/root-6.08.00/core/unix/src/TUnixSystem.cxx:3661#5
<signal handler called>#6  G4VelocityTable::Interpolation (this=0x374f1c0)
at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/track/include/G4VelocityTable.hh:118#7
G4VelocityTable::Value (this=0x374f1c0,
theEnergy=theEnergyentry=-nan(0x8000000000000)) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/track/src/G4VelocityTable.cc:151#8
0x00007f799792b230 in G4Track::CalculateVelocity (this=thisentry=0x3754130)
at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/track/src/G4Track.cc:247#9
0x00007f79979271dc in G4ParticleChangeForLoss::UpdateStepForAlongStep
(this=0x3584e88, pStep=0x319e090) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/track/src/G4ParticleChangeForLoss.cc:230#10
0x00007f7999bd2be4 in G4SteppingManager::InvokeAlongStepDoItProcs
(this=thisentry=0x319def0) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/tracking/src/G4SteppingManager2.cc:420#11
0x00007f7999bd085c in G4SteppingManager::Stepping (this=0x319def0) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/tracking/src/G4SteppingManager.cc:191#12
0x00007f7999bdb2e5 in G4TrackingManager::ProcessOneTrack (this=0x319deb0,
apValueG4Track=apValueG4Trackentry=0x3754130) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/tracking/src/G4TrackingManager.cc:126#13
0x00007f7999e0f5a6 in G4EventManager::DoProcessing (this=0x319de10,
anEvent=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/event/src/G4EventManager.cc:184#14
0x00007f7999e0fd9c in G4EventManager::ProcessOneEvent (this=<optimized
out>, anEvent=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/event/src/G4EventManager.cc:335#15
0x00007f799a094657 in G4RunManager::ProcessOneEvent (this=0x2b79ae0,
i_event=5476) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/run/src/G4RunManager.cc:399#16
0x00007f799a092e53 in G4RunManager::DoEventLoop (this=0x2b79ae0,
n_event=10000, macroFile=<optimized out>, n_select=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/run/src/G4RunManager.cc:367#17
0x00007f799a092b7e in G4RunManager::BeamOn (this=0x2b79ae0, n_event=10000,
macroFile=0x0, n_select=-1) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/run/src/G4RunManager.cc:273#18
0x00000000009ede72 in GateApplicationMgr::StartDAQ() ()#19
0x00000000009c9e10 in
GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) ()#20
0x00007f7996a76a6d in G4UIcommand::DoIt (this=0x350eb20, parameterList=...)
at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIcommand.cc:230#21
0x00007f7996a8a2dc in G4UImanager::ApplyCommand (this=0x27617d0,
aCmd=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UImanager.cc:523#22
0x00007f7996a8a9a8 in G4UImanager::ApplyCommand (this=<optimized out>,
aCmd=...) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UImanager.cc:441#23
0x00007f7996a67847 in G4UIbatch::ExecCommand (this=thisentry=0x3514400,
command=...) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIbatch.cc:170#24
0x00007f7996a68a3e in G4UIbatch::SessionStart (this=0x3514400) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIbatch.cc:215#25
0x00007f7996a8acf2 in G4UImanager::ExecuteMacroFile
(this=thisentry=0x27617d0, fileName=0x7ffddcaf8c90 "mac/main.mac") at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UImanager.cc:296#26
0x00007f7996a7ddd0 in G4UIcontrolMessenger::SetNewValue (this=0x2761c00,
command=commandentry=0x2762450, newValue=...) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIcontrolMessenger.cc:313#27
0x00007f7996a76a6d in G4UIcommand::DoIt (this=0x2762450, parameterList=...)
at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIcommand.cc:230#28
0x00007f7996a8a2dc in G4UImanager::ApplyCommand (this=0x27617d0,
aCmd=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UImanager.cc:523#29
0x00000000004fdb4c in main
()===========================================================The lines
below might hint at the cause of the crash.You may get help by asking at
the ROOT forum http://root.cern.ch/forum <http://root.cern.ch/forum>.Only
if you are really convinced it is a bug in ROOT then please submit areport
at http://root.cern.ch/bugs <http://root.cern.ch/bugs>. Please post the
ENTIRE stack tracefrom above as an attachment in addition to anything
elsethat might help us fixing this
issue.===========================================================#6
G4VelocityTable::Interpolation (this=0x374f1c0) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/track/include/G4VelocityTable.hh:118#7
G4VelocityTable::Value (this=0x374f1c0,
theEnergy=theEnergyentry=-nan(0x8000000000000)) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/track/src/G4VelocityTable.cc:151#8
0x00007f799792b230 in G4Track::CalculateVelocity (this=thisentry=0x3754130)
at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/track/src/G4Track.cc:247#9
0x00007f79979271dc in G4ParticleChangeForLoss::UpdateStepForAlongStep
(this=0x3584e88, pStep=0x319e090) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/track/src/G4ParticleChangeForLoss.cc:230#10
0x00007f7999bd2be4 in G4SteppingManager::InvokeAlongStepDoItProcs
(this=thisentry=0x319def0) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/tracking/src/G4SteppingManager2.cc:420#11
0x00007f7999bd085c in G4SteppingManager::Stepping (this=0x319def0) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/tracking/src/G4SteppingManager.cc:191#12
0x00007f7999bdb2e5 in G4TrackingManager::ProcessOneTrack (this=0x319deb0,
apValueG4Track=apValueG4Trackentry=0x3754130) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/tracking/src/G4TrackingManager.cc:126#13
0x00007f7999e0f5a6 in G4EventManager::DoProcessing (this=0x319de10,
anEvent=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/event/src/G4EventManager.cc:184#14
0x00007f7999e0fd9c in G4EventManager::ProcessOneEvent (this=<optimized
out>, anEvent=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/event/src/G4EventManager.cc:335#15
0x00007f799a094657 in G4RunManager::ProcessOneEvent (this=0x2b79ae0,
i_event=5476) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/run/src/G4RunManager.cc:399#16
0x00007f799a092e53 in G4RunManager::DoEventLoop (this=0x2b79ae0,
n_event=10000, macroFile=<optimized out>, n_select=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/run/src/G4RunManager.cc:367#17
0x00007f799a092b7e in G4RunManager::BeamOn (this=0x2b79ae0, n_event=10000,
macroFile=0x0, n_select=-1) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/run/src/G4RunManager.cc:273#18
0x00000000009ede72 in GateApplicationMgr::StartDAQ() ()#19
0x00000000009c9e10 in
GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) ()#20
0x00007f7996a76a6d in G4UIcommand::DoIt (this=0x350eb20, parameterList=...)
at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIcommand.cc:230#21
0x00007f7996a8a2dc in G4UImanager::ApplyCommand (this=0x27617d0,
aCmd=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UImanager.cc:523#22
0x00007f7996a8a9a8 in G4UImanager::ApplyCommand (this=<optimized out>,
aCmd=...) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UImanager.cc:441#23
0x00007f7996a67847 in G4UIbatch::ExecCommand (this=thisentry=0x3514400,
command=...) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIbatch.cc:170#24
0x00007f7996a68a3e in G4UIbatch::SessionStart (this=0x3514400) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIbatch.cc:215#25
0x00007f7996a8acf2 in G4UImanager::ExecuteMacroFile
(this=thisentry=0x27617d0, fileName=0x7ffddcaf8c90 "mac/main.mac") at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UImanager.cc:296#26
0x00007f7996a7ddd0 in G4UIcontrolMessenger::SetNewValue (this=0x2761c00,
command=commandentry=0x2762450, newValue=...) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIcontrolMessenger.cc:313#27
0x00007f7996a76a6d in G4UIcommand::DoIt (this=0x2762450, parameterList=...)
at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UIcommand.cc:230#28
0x00007f7996a8a2dc in G4UImanager::ApplyCommand (this=0x27617d0,
aCmd=<optimized out>) at
/home/simu/Programas/Geant4/geant4.10.02.p03/source/intercoms/src/G4UImanager.cc:523#29
0x00000000004fdb4c in main
()===========================================================WARNING -
Attempt to delete the physical volume store while geometry closed !WARNING
- Attempt to delete the logical volume store while geometry closed !WARNING
- Attempt to delete the solid store while geometry closed !WARNING -
Attempt to delete the region store while geometry closed !*

The particular is that this error just appear after 1000 or 10000 particles.

If someone knows something, I appreciate any help.

Best Regards
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[Gate-users] *** Break *** segmentation violation - Gate8

[Gate-users] * Break * segmentation violation - Gate8