[Gate-users] Problems compiling Gate_v7.2, using Ubuntu 16.04

Tue Nov 29 19:15:29 CET 2016

FYI, I have used pFrag->SetCanExtend(TH1::kAllAxes)  instead of pFrag->SetCanExtend(TH1::kXaxis).

Not sure if it’s better or worse …

Richard

Richard Taschereau, Ph.D.
Associate Researcher
Crump Institute for Molecular Imaging
University of California, Los Angeles
570 Westwood Plaza, Building 114, room 4350-C
Los Angeles, CA 90095-1770
Phone: (310) 825-0697
Fax:     (310) 206-8975

On Nov 29, 2016, at 8:02 AM, David Boersma <david.boersma at physics.uu.se<mailto:david.boersma at physics.uu.se>> wrote:

Hi Nicolas,

Den 29/11/2016 kl. 16:19, skrev Triltsch, Nicolas:
Hey,

if I put both options to OFF, I obtain following errors:

Hope someone can help me:)

That error ("kCanRebin is not a member of TH1") looks like you are trying to build Gate 7.2 with ROOT 6.x.y instead of ROOT 5.x.y. This has been fixed in the development version (where "fixed" means: you can use either ROOT 5 or 6).

I *think* (someone please correct me if I'm wrong) that the only necessary code change is in

source/digits_hits/src/GateSecondaryProductionActor.cc<http://gatesecondaryproductionactor.cc>,

where you need to replace this line (line number 61) ...

pFrag->SetBit(TH1::kCanRebin);

... by the following blurb:

#if ROOT_VERSION_CODE >= ROOT_VERSION(6,0,0)
 pFrag->SetCanExtend(TH1::kXaxis); // <--- Root6
#else
 pFrag->SetBit(TH1::kCanRebin); // <--- Root5
#endif

Alternative solutions:

(A) use the development version (with ROOT 6 or ROOT 5)

(B) if you really want the GATE v7.2 release, without hacks: install ROOT version 5.x.y and make sure that this is the only ROOT version that is visible/used in your shell environment (during compiling, linking *and* running).

Hope that helps,
David Boersma

On 11/29/2016 04:06 PM, G Cosme wrote:
Hi!

When compiling GATE with ccmake, do you have the options
GATE_DOWNLOAD_BENCHMARK_DATA and GATE_DOWNLOAD_EXAMPLES_DATA on or
off? If on, try to compile with both options off.

Hope that helps!
Gonçalo

2016-11-29 15:03 GMT+00:00 Triltsch, Nicolas <nicolas.triltsch at tum.de<mailto:nicolas.triltsch at tum.de>
<mailto:nicolas.triltsch at tum.de>>:

   Hey everyone,

   After having problems with my current gate installation, I decided
   to reinstall GATE. Therefore I deleted the 3 folders /gate_v7.2/,
   /gate_v7.2-build/ and /gate_v7.2-install/. I downloaded the
   gate_v7.2 source code again from
   /https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwiki.opengatecollaboration.org%2Findex.php%2FCompilation_Instructions_V7.2&data=01%7C01%7Crtaschereau%40mednet.ucla.edu%7Ceaeed417381d44ba232908d4187116f9%7C39c3716b64714fd5ac04a7dbaa32782b%7C0&sdata=yvcI4ty60up6raZB5x0Y5JpQne5wqgu47784eN0pNgc%3D&reserved=0
   <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwiki.opengatecollaboration.org%2Findex.php%2FCompilation_Instructions_V7.2&data=01%7C01%7Crtaschereau%40mednet.ucla.edu%7Ceaeed417381d44ba232908d4187116f9%7C39c3716b64714fd5ac04a7dbaa32782b%7C0&sdata=yvcI4ty60up6raZB5x0Y5JpQne5wqgu47784eN0pNgc%3D&reserved=0>/
   and created new folders /gate_v7.2-build/ and /gate_v7.2-install/.
   Then I wanted to compile the source code using ccmake, but I get
   the following error after around 10% of compiling progress:

   "

   /-- Downloaded object:
   "/usr/local/bin/gate_v7.2-build/ExternalData/Objects/MD5/b809cfe42b1697c39fe95649dede4240"//
   //CMakeFiles/Makefile2:141: recipe for target
   'CMakeFiles/GateExampleData.dir/all' failed//
   //make[1]: *** [CMakeFiles/GateExampleData.dir/all] Error 2//
   //Makefile:127: recipe for target 'all' failed//
   //make: *** [all] Error 2/

   "

   Any ideas? I suspect there might be something wrong with the
   download of the Examples...

   Thanks!

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