[Gate-users] Error in GATE simulation on a Cluster

[Hermann Fuchs]

Hello Andre,

this seems to me like a problem related to different file encodings.
For instance, Windows uses linefeed and carriage return to mark a new line,
while files made in linux only use linefeed.

Additional (non expected) characters may not be displayed in an editor, 
but could wreak havoc with your simulation.

Try deleting the conflicting line and retyping it (including the new line).

Cheers,
Hermann

On 03/23/2015 11:34 AM, André Miguel Monteiro wrote:
>
> Dear GATE users,
>
>
> I am trying to run a simulation on a sge cluster platform, but I am 
> getting an error:
>
>
>
> [G4]
> [G4] *************************************************************
> [G4]  Geant4 version Name: geant4-09-04-patch-04  (13-April-2012)
> [G4]                       Copyright : Geant4 Collaboration
> [G4]                       Reference : NIM A 506 (2003), 250-303
> [G4]                             WWW : http://cern.ch/geant4
> [G4] *************************************************************
> [G4]
> [Core-0] Initialization of geometry
> [Core-0] Initialization of physics
> [Core-0] Initialization of actors
> [Core-0]
> [Core-0] 
> **********************************************************************
> [Core-0]  GATE version name: gate_v6.1
> [Core-0]                     Copyright : OpenGATE Collaboration
> [Core-0]                     Reference : Phys. Med. Biol. 49 (2004) 
> 4543-4561
> [Core-0]                     Reference : Phys. Med. Biol. 56 (2011) 
> 881-901
> [Core-0]                     WWW : http://www.opengatecollaboration.org/
> [Core-0] 
> **********************************************************************
> [Core-0]
> [Core-0] Starting macro 
> /gridware/workdir/ammonteiro/.Gate/March19_1/March19_10.mac
> [G4]  Rmin/gate/tumor1/geometry/setRmin
>
>
> List of Enabled processes:
>
>
>    ===  Process: RayleighScattering  ===
> Particle: gamma
>     * Model(s):
>        - PenelopeModel
>
>    ===  Process: PhotoElectric  ===
> Particle: gamma
>     * Model(s):
>        - StandardModel
>    ===  Process: MultipleScattering  ===
> Particle: e-
>
>    ===  Process: ElectronIonisation  ===
> Particle: e+
>     * Model(s):
>        - <!> *** Warning *** <!> No model selected!
> Particle: e-
>     * Model(s):
>        - StandardModel
>
>    ===  Process: Compton  ===
> Particle: gamma
>     * Model(s):
>        - PenelopeModel
>  ===  Process: Bremsstrahlung  ===
> Particle: e+
>     * Model(s):
>        - <!> *** Warning *** <!> No model selected!
> Particle: e-
>     * Model(s):
>        - StandardModel
> List of initialized processes:​
>
>
> [G4-cerr] ***** COMMAND NOT FOUND <^M> *****
> [Gate] Sorry, error in a macro command : abort.
>
>
> However when I run it on my PC the simulation goes well.
>
> What is the problem?
>
> Thank you,
>
> André
>
>
>
>
>
>
> --------------------------------
> MSc Student in Biomedical and Biophysics Engineering at Faculty of 
> Sciences of the University of Lisbon
>
> Instituteof Biophysics andBiomedical Engineering
> Facultyof Sciences, Universityof Lisbon
> Campo Grande
> 1749-016 Lisbon
>
> Room Office: 1.02
> Extension: 20509
> Email: ammonteiro at fc.ul.pt
> LinkedIn Profile: http://linkedin.com/in/andremmonteiro
> Website: http://www.ibeb.fc.ul.pt/
>
>
> _______________________________________________
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-- 
-------------
DI Hermann Fuchs
Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology
Department of Radiation Oncology
Medical University Vienna
Währinger Gürtel 18-20
A-1090 Wien

Tel.  + 43 / 1 / 40 400 72710
Mail. hermann.fuchs at meduniwien.ac.at

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