[Gate-users] Exemple RT : crash

[Luc SIMON]

Dear David

Thank you ! It works !

Actually I didn't see that A.raw.md5 was only a 33 bits file (not very big
for a CT series).

Please notice that using mac os x, a symbolic link named patient-2mm.raw is
created to the following path : ../GATE/gate_build/ExternalData/Objects/MD5/
2c44e3a8f824a414f0b6531ece16c528
with hexadecimal file names (thank you Sara too). I don't know if it is the
same behavior with other distributions (other than mac os x). But it
works...

A last question : I am looking for a  "raw to dicom RT dose" converter for
mac ? I d be very interested if it exists.

I found something that seems to achieve that, but only for Windows7
http://radonc.uams.edu/research/dicoman/

Luc



2015-03-16 8:33 GMT+01:00 David Sarrut <David.Sarrut at creatis.insa-lyon.fr>:

> Hello Luc,
>
> did the file patient-2mm.raw exists ? An image is stored with 2 files :
> A.mhd (the header) and A.raw (the pixel data).
>
> If not, in cmake, set GATE_DOWNLOAD_EXAMPLES_DATA to ON to download the
> data
>
> welcome back to Gate ;)
> David
>
> On Thu, Mar 12, 2015 at 10:46 PM, Luc SIMON <uhqd75 at gmail.com> wrote:
>
>> Dear Gaters
>>
>> It is a real pleasure to me to come back here after a 12 years break. I
>> worked previously in Lausanne at the very beginning of Gate v1...
>> I am going to use Gate again for new purposes, in particular in RT.
>> Well... a lot to learn with all these new features.
>> I start with a newbee question, but if someone can help...
>>
>> I installed GATE V7 on a mac book Yosemite 10.10.2
>> my configuration is at the end of this email,  hereafter.
>>
>> Well It half works.
>> I execute some exemples of Geant4 and GATE with success (PETcylindrilcal
>> is ok with visualization !!)
>> But I try to execute Radiotherapy examples and it doesn't work.
>>
>> I tried  example_Radiotherapy/example2/mac/main-NPV1.mac
>>
>> and it doesnt work.
>> The following command :
>>
>> Idle> /control/execute mac/start.mac
>>
>> gives :
>>
>> [Core-0] Initialization of geometry
>>
>> MetaImage: Read: Cannot open data file
>>
>> GateMHDImage.cc (l.185): MHD File cannot be read: data/patient-2mm.mhd
>>
>>
>> I checked the rwx rights of the file patient-2mm.mhd
>>
>> and it is ok (rwxrwxrwx)
>>
>>
>> Can someone has the same problem ?
>>
>> I must add that I changed
>>
>> #/vis/open                             OGLIQt
>> to
>>
>> /vis/open OGLSX
>>
>> because it didn't work with OGLIQt
>>
>> Thank you
>>
>>
>>
>>
>>
>>
>> config  :
>>
>> CMAKE 3.1.3
>>
>> xcode 6.1.1
>>
>> xquartz 2.7.7
>>
>> cmake 2.8.12.2
>>
>> CLHEP 2.1.3.1
>>
>> root v5.34.26
>>
>> GEANT4.9.6p04
>>
>> GATE v7.0
>>
>> --
>> ___________________
>>
>> SIMON Luc, PhD
>> 28, rue Pierre Barthes
>> 31500 Toulouse
>>
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>
>
>
> --
> David Sarrut, Phd
> Directeur de recherche CNRS
> CREATIS, UMR CNRS 5220, Inserm U 1044
> Centre de lutte contre le cancer Léon Bérard
> 28 rue Laënnec, 69373 Lyon cedex 08
> Tel : 04 78 78 51 51 / 06 74 72 05 42
> http://www.creatis.insa-lyon.fr/~dsarrut
> _________________________________
>  "2 + 2 = 5,  for extremely large values of 2"
> _________________________________
>



-- 
___________________

SIMON Luc, PhD
28, rue Pierre Barthes
31500 Toulouse
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