<div dir="ltr">Dear David<div><br></div><div>Thank you ! It works !</div><div> </div><div>Actually I didn't see that A.raw.md5 was only a 33 bits file (not very big for a CT series). </div><div><br></div><div>Please notice that using mac os x, a symbolic link named patient-2mm.raw is created to the following path : ..<span style="color:rgb(76,47,45);font-family:Courier;font-size:12px;background-color:rgb(223,219,196)">/GATE/gate_build/ExternalData/Objects/MD5/</span><span style="color:rgb(76,47,45);font-family:Courier;font-size:12px;background-color:rgb(223,219,196)">2c44e3a8f824a414f0b6531ece16c528</span></div><div>with hexadecimal file names (thank you Sara too). I don't know if it is the same behavior with other distributions (other than mac os x). But it works...</div><div><br></div><div>A last question : I am looking for a "raw to dicom RT dose" converter for mac ? I d be very interested if it exists. </div><div><br></div><div>I found something that seems to achieve that, but only for Windows7 <a href="http://radonc.uams.edu/research/dicoman/">http://radonc.uams.edu/research/dicoman/</a></div><div><br></div><div>Luc</div><div><br></div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">2015-03-16 8:33 GMT+01:00 David Sarrut <span dir="ltr"><<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank">David.Sarrut@creatis.insa-lyon.fr</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hello Luc, <div><br></div><div>did the file patient-2mm.raw exists ? An image is stored with 2 files : A.mhd (the header) and A.raw (the pixel data). </div><div><br></div><div>If not, in cmake, set GATE_DOWNLOAD_EXAMPLES_DATA to ON to download the data</div><div><br></div><div>welcome back to Gate ;)</div><div>David</div></div><div class="gmail_extra"><br><div class="gmail_quote"><div><div class="h5">On Thu, Mar 12, 2015 at 10:46 PM, Luc SIMON <span dir="ltr"><<a href="mailto:uhqd75@gmail.com" target="_blank">uhqd75@gmail.com</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5"><div dir="ltr">Dear Gaters<div><br></div><div>It is a real pleasure to me to come back here after a 12 years break. I worked previously in Lausanne at the very beginning of Gate v1... </div><div>I am going to use Gate again for new purposes, in particular in RT.</div><div>Well... a lot to learn with all these new features.</div><div>I start with a newbee question, but if someone can help...</div><div><br></div><div>I installed GATE V7 on a mac book Yosemite 10.10.2</div><div>my configuration is at the end of this email, hereafter. </div><div><br></div><div>Well It half works. </div><div>I execute some exemples of Geant4 and GATE with success (PETcylindrilcal is ok with visualization !!)</div><div>But I try to execute Radiotherapy examples and it doesn't work.</div><div><br></div><div>I tried example_Radiotherapy/example2/mac/main-NPV1.mac</div><div><br></div>
<div>and it doesnt work.</div><div>The following command :</div><div>
<p><span>Idle> /control/execute mac/start.mac </span></p>
<p><span>gives :</span></p><p><span>[Core-0] Initialization of geometry</span></p>
<p><span>MetaImage: Read: Cannot open data file</span></p>
<p><span>GateMHDImage.cc (l.185): MHD File cannot be read: data/patient-2mm.mhd</span></p><p><span><br></span></p><p><span>I checked the rwx rights of the file patient-2mm.mhd </span></p><p><span>and it is ok (rwxrwxrwx)</span></p><p><span><br></span></p><p><span>Can someone has the same problem ?</span></p><p><span>I must add that I changed</span></p><p>#/vis/open OGLIQt</p><div>to </div><p>/vis/open<span style="white-space:pre-wrap"> </span>OGLSX</p><p><span></span></p><p>because it didn't work with OGLIQt</p><p><span>Thank you</span></p><p><span><br></span></p><p><span><br></span></p></div><div><br></div><div><br></div><div><br></div><div>config :</div><div>
<p><span>CMAKE 3.1.3</span></p><p><span>xcode 6.1.1</span></p><p><span>xquartz 2.7.7</span></p><p><span>cmake 2.8.12.2</span></p><p><span>CLHEP 2.1.3.1</span></p><p><span>root v5.34.26</span></p><p><span>GEANT4.9.6p04</span></p><p><span>GATE v7.0</span></p><span><font color="#888888"><div><br></div>-- <br><div>___________________<br><br>SIMON Luc, PhD<br>28, rue Pierre Barthes<br>31500 Toulouse</div>
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<a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><span class="HOEnZb"><font color="#888888"><br></font></span></blockquote></div><span class="HOEnZb"><font color="#888888"><br><br clear="all"><div><br></div>-- <br><div><div dir="ltr">David Sarrut, Phd<br>Directeur de recherche CNRS<br>CREATIS, UMR CNRS 5220, Inserm U 1044<div>Centre de lutte contre le cancer Léon Bérard<br>28 rue Laënnec, 69373 Lyon cedex 08<br>Tel : 04 78 78 51 51 / 06 74 72 05 42<br><a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a><br>_________________________________</div><div> "2 + 2 = 5, for extremely large values of 2"<br>_________________________________</div></div></div>
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</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature">___________________<br><br>SIMON Luc, PhD<br>28, rue Pierre Barthes<br>31500 Toulouse</div>
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