[Gate-users] Gate problem and root problem

Debendranath Sahoo deba999 at gmail.com
Tue May 20 09:31:50 CEST 2014 

Dear Knap,

Can you send  to me your macro file so that I can debug it. I am also
simulating a mini-gamma camera with position-sensitive photomultipliers. I
had also faced the same error. I simply copied the GateMaterials.db file to
my working directory and then it worked. Also  please send me your
directory tree.

Cheers,

deba999






On Tue, May 20, 2014 at 1:39 AM, Marc Chamberland <
MarcChamberland at cmail.carleton.ca> wrote:

> Hi Michał,
>
> Did you use the setMaterialDatabase and point it to your material
> database? The command can be found here:
> http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Materials#The_Gate_material_database
>
> If you did, then I would check the line ending encoding in your file. Make
> sure it is Unix-style.
>
> As for Root, what are you trying to do? If you want to read a Root output
> file with a GUI, then see the user's guide:
> http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Data_output#The_Root_output
>
> You open your file with:
>
> >root yourFile.root
>
> Then on the root command line, you type:
> root[1] TBrowser t
>
>
> Cheers,
> Marc
>
>
>
> __________________________
>
> Marc Chamberland, MSc
> PhD candidate
> Department of Physics
> Carleton University
> Ottawa (ON)
>
> On May 19, 2014, at 15:51, Michal Knap <michal.knap at gmail.com> wrote:
>
> > H​i,
> > I'm doing a minigammacamera ​with Gate. I have problem with "materials"?
> Why Gate dont see "vacuum"? I have everything in one direction
> (/home/mknap/Simulation).
> >
> > mknap at mknap-HP:~$ cd Simulation
> > mknap at mknap-HP:~/Simulation$ ls
> > 2.1.3.1          gate.7.0-build    geant4.9.6.p03
>  Minigamma1pointonsourcecollimator  your_file.bashrc~
> > 2.1.3.1-build    gate.7.0-install  geant4.9.6.p03-build    root
> > 2.1.3.1-install  gate_v7.0         geant4.9.6.p03-install
>  your_file.bashrc
> > mknap at mknap-HP:~/Simulation$ source your_file.bashrc
> >
> > my your_file.bashrc file :
> >
> > source /home/mknap/Simulation/root/bin/thisroot.sh
> > export PATH=$PATH:/home/mknap/Simulation/2.1.3.1/CLHEP/bin
> > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/mknap/Simulation/
> 2.1.3.1/CLHEP/lib
> > source /home/mknap/Simulation/geant4.9.6.p03-install/bin/geant4.sh
> > export PATH=$PATH:/home/mknap/Simulation/gate.7.0-install/bin
> >
> >
> > I can run Gate:
> > mknap at mknap-HP:~/Simulation$ Gate
> >
> > *************************************************************
> >  Geant4 version Name: geant4-09-06-patch-03    (14-March-2014)
> >                       Copyright : Geant4 Collaboration
> >                       Reference : NIM A 506 (2003), 250-303
> >                             WWW : http://cern.ch/geant4
> > *************************************************************
> >
> > Visualization Manager instantiating with verbosity "warnings (3)"...
> > Visualization Manager initialising...
> > Registering graphics systems...
> >
> > You have successfully registered the following graphics systems.
> > Current available graphics systems are:
> >   ASCIITree (ATree)
> >   DAWNFILE (DAWNFILE)
> >   G4HepRep (HepRepXML)
> >   G4HepRepFile (HepRepFile)
> >   OpenGLImmediateX (OGLI, OGLIX)
> >   OpenGLStoredX (OGL, OGLS, OGLSX)
> >   RayTracer (RayTracer)
> >   VRML1FILE (VRML1FILE)
> >   VRML2FILE (VRML2FILE)
> >   gMocrenFile (gMocrenFile)
> >
> > Registering model factories...
> >
> > You have successfully registered the following model factories.
> > Registered model factories:
> >   generic
> >   drawByCharge
> >   drawByParticleID
> >   drawByOriginVolume
> >   drawByAttribute
> >
> > Registered filter factories:
> >   chargeFilter
> >   particleFilter
> >   originVolumeFilter
> >   attributeFilter
> >
> > You have successfully registered the following user vis actions.
> > Run Duration User Vis Actions: none
> > End of Event User Vis Actions: none
> > End of Run User Vis Actions: none
> >
> > Some /vis commands (optionally) take a string to specify colour.
> > Available colours:
> >   black, blue, brown, cyan, gray, green, grey, magenta, red, white,
> yellow
> >
> > [Core-0] Initialization of geometry
> > [Core-0] Initialization of physics
> > [Physic-0] WARNING: manual physic lists are being deprecated.
> > Please, use physic list builder mechanism instead. Related documentation
> can be found at:
> >
> http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics
> > [Core-0] Initialization of actors
> > [Core-0]
> > [Core-0]
> **********************************************************************
> > [Core-0]  GATE version name: gate_v7.0
> > [Core-0]                     Copyright : OpenGATE Collaboration
> > [Core-0]                     Reference : Phys. Med. Biol. 49 (2004)
> 4543-4561
> > [Core-0]                     Reference : Phys. Med. Biol. 56 (2011)
> 881-901
> > [Core-0]                     WWW : http://www.opengatecollaboration.org
> > [Core-0]
> **********************************************************************
> > [Core-0]
> > [Core-0] You are using Geant4 version 9.6.3
> > Idle>
> >
> > and when i try to run script i get this message :
> >
> >
> > /gate/world/daughters/name SPECThead
> > /gate/world/daughters/insert box
> > GateMaterialDatabase.cc (l.131): GateMaterialDatabase: could not find
> the definition for material 'Vacuum' in material files
> > mknap at mknap-HP:~/Simulation$
> >
> >
> > ​What i have wrong? Why Gate doesn't see "Vacuum"?
> >
> > And another problem with root. I have root 5.34.18.
> > I/m trying to run root and i cant get gui.
> >
> > ​mknap at mknap-HP:~/Simulation$ root
> >   *******************************************
> >   *                                         *
> >   *        W E L C O M E  to  R O O T       *
> >   *                                         *
> >   *   Version   5.34/18     14 March 2014   *
> >   *                                         *
> >   *  You are welcome to visit our Web site  *
> >   *          http://root.cern.ch            *
> >   *                                         *
> >   *******************************************
> >
> > ROOT 5.34/18 (v5-34-18 at v5-34-18, Mar 14 2014, 16:29:50 on linux)
> >
> > CINT/ROOT C/C++ Interpreter version 5.18.00, July 2, 2010
> > Type ? for help. Commands must be C++ statements.
> > Enclose multiple statements between { }.
> > root [0]
> >
> > How i can get gui in root?
> >
> > Thank all in advance
> >
> > Regards
> > Michał Knap
> > _______________________________________________
> > Gate-users mailing list
> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users




-- 
*Dr Debendranath Sahoo*
Honorary Professor
Physics Department
Sri Sathya Sai Institute of Higher Learning
Prashanthi Nilayam
Puttaparthy
A.P. 515 134
e-mail: deba999 at gmail.com
Mobile: *094945-43026*
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140520/f4fcd622/attachment-0001.html>

More information about the Gate-users mailing list