<div dir="ltr"><div><div><div>Dear Knap, </div>Can you send to me your macro file so that I can debug it. I am also simulating a mini-gamma camera with position-sensitive photomultipliers. I had also faced the same error. I simply copied the GateMaterials.db file to my working directory and then it worked. Also please send me your directory tree. </div>Cheers, </div>deba999 <div><div> </div></div></div><div class="gmail_extra"> <div class="gmail_quote">On Tue, May 20, 2014 at 1:39 AM, Marc Chamberland <<a href="mailto:MarcChamberland@cmail.carleton.ca" target="_blank">MarcChamberland@cmail.carleton.ca</a>> wrote: <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Michał, Did you use the setMaterialDatabase and point it to your material database? The command can be found here: <a href="http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Materials#The_Gate_material_database" target="_blank">http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Materials#The_Gate_material_database</a> If you did, then I would check the line ending encoding in your file. Make sure it is Unix-style. As for Root, what are you trying to do? If you want to read a Root output file with a GUI, then see the user's guide: <a href="http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Data_output#The_Root_output" target="_blank">http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Data_output#The_Root_output</a> You open your file with: >root yourFile.root Then on the root command line, you type: root[1] TBrowser t Cheers, Marc __________________________ Marc Chamberland, MSc PhD candidate Department of Physics Carleton University Ottawa (ON) On May 19, 2014, at 15:51, Michal Knap <<a href="mailto:michal.knap@gmail.com">michal.knap@gmail.com</a>> wrote: > Hi, > I'm doing a minigammacamera with Gate. I have problem with "materials"? Why Gate dont see "vacuum"? I have everything in one direction (/home/mknap/Simulation). > > mknap@mknap-HP:~$ cd Simulation > mknap@mknap-HP:~/Simulation$ ls > 2.1.3.1 gate.7.0-build geant4.9.6.p03 Minigamma1pointonsourcecollimator your_file.bashrc~ > 2.1.3.1-build gate.7.0-install geant4.9.6.p03-build root > 2.1.3.1-install gate_v7.0 geant4.9.6.p03-install your_file.bashrc > mknap@mknap-HP:~/Simulation$ source your_file.bashrc > > my your_file.bashrc file : > > source /home/mknap/Simulation/root/bin/thisroot.sh > export PATH=$PATH:/home/mknap/Simulation/<a href="http://2.1.3.1/CLHEP/bin" target="_blank">2.1.3.1/CLHEP/bin</a> > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/mknap/Simulation/<a href="http://2.1.3.1/CLHEP/lib" target="_blank">2.1.3.1/CLHEP/lib</a> > source /home/mknap/Simulation/geant4.9.6.p03-install/bin/geant4.sh > export PATH=$PATH:/home/mknap/Simulation/gate.7.0-install/bin > > > I can run Gate: > mknap@mknap-HP:~/Simulation$ Gate > > ************************************************************* > Geant4 version Name: geant4-09-06-patch-03 (14-March-2014) > Copyright : Geant4 Collaboration > Reference : NIM A 506 (2003), 250-303 > WWW : <a href="http://cern.ch/geant4" target="_blank">http://cern.ch/geant4</a> > ************************************************************* > > Visualization Manager instantiating with verbosity "warnings (3)"... > Visualization Manager initialising... > Registering graphics systems... > > You have successfully registered the following graphics systems. > Current available graphics systems are: > ASCIITree (ATree) > DAWNFILE (DAWNFILE) > G4HepRep (HepRepXML) > G4HepRepFile (HepRepFile) > OpenGLImmediateX (OGLI, OGLIX) > OpenGLStoredX (OGL, OGLS, OGLSX) > RayTracer (RayTracer) > VRML1FILE (VRML1FILE) > VRML2FILE (VRML2FILE) > gMocrenFile (gMocrenFile) > > Registering model factories... > > You have successfully registered the following model factories. > Registered model factories: > generic > drawByCharge > drawByParticleID > drawByOriginVolume > drawByAttribute > > Registered filter factories: > chargeFilter > particleFilter > originVolumeFilter > attributeFilter > > You have successfully registered the following user vis actions. > Run Duration User Vis Actions: none > End of Event User Vis Actions: none > End of Run User Vis Actions: none > > Some /vis commands (optionally) take a string to specify colour. > Available colours: > black, blue, brown, cyan, gray, green, grey, magenta, red, white, yellow > > [Core-0] Initialization of geometry > [Core-0] Initialization of physics > [Physic-0] WARNING: manual physic lists are being deprecated. > Please, use physic list builder mechanism instead. Related documentation can be found at: > <a href="http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics" target="_blank">http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics</a> > [Core-0] Initialization of actors > [Core-0] > [Core-0] ********************************************************************** > [Core-0] GATE version name: gate_v7.0 > [Core-0] Copyright : OpenGATE Collaboration > [Core-0] Reference : Phys. Med. Biol. 49 (2004) 4543-4561 > [Core-0] Reference : Phys. Med. Biol. 56 (2011) 881-901 > [Core-0] WWW : <a href="http://www.opengatecollaboration.org" target="_blank">http://www.opengatecollaboration.org</a> > [Core-0] ********************************************************************** > [Core-0] > [Core-0] You are using Geant4 version 9.6.3 > Idle> > > and when i try to run script i get this message : > > > /gate/world/daughters/name SPECThead > /gate/world/daughters/insert box > GateMaterialDatabase.cc (l.131): GateMaterialDatabase: could not find the definition for material 'Vacuum' in material files > mknap@mknap-HP:~/Simulation$ > > > What i have wrong? Why Gate doesn't see "Vacuum"? > > And another problem with root. I have root 5.34.18. > I/m trying to run root and i cant get gui. > > mknap@mknap-HP:~/Simulation$ root > ******************************************* > * * > * W E L C O M E to R O O T * > * * > * Version 5.34/18 14 March 2014 * > * * > * You are welcome to visit our Web site * > * <a href="http://root.cern.ch" target="_blank">http://root.cern.ch</a> * > * * > ******************************************* > > ROOT 5.34/18 (v5-34-18@v5-34-18, Mar 14 2014, 16:29:50 on linux) > > CINT/ROOT C/C++ Interpreter version 5.18.00, July 2, 2010 > Type ? for help. Commands must be C++ statements. > Enclose multiple statements between { }. > root [0] > > How i can get gui in root? > > Thank all in advance > > Regards > Michał Knap > _______________________________________________ > Gate-users mailing list > <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></blockquote></div> -- Dr Debendranath Sahoo Honorary Professor Physics Department Sri Sathya Sai Institute of Higher Learning Prashanthi Nilayam Puttaparthy A.P. 515 134 e-mail: <a href="mailto:deba999@gmail.com" target="_blank">deba999@gmail.com</a> Mobile: 094945-43026 </div>