[Gate-users] Edugate-example problem
Pietrzyk, Uwe
u.pietrzyk at fz-juelich.de
Mon May 12 22:49:28 CEST 2014
Dear Dr. Sahoo,
this is not an EduGATE or GATE problem. The following lines
which I have copied below from your output, simply tell you
that G4LEDATA is not set and maybe the data are simply missing.
Please check the folder where GEANT4 wantsto find the data files it
needs for the simulation. Obviously, something is missing.
Concerning EduGATE, there will be more examples soon and
the older ones probably need to be maintained for GATE 6.2 and 7.0.
We will let you know, when this has happened.
Kind regards and best wishes,
Uwe Pietrzyk
-------- EEEE ------- G4Exception-START -------- EEEE -------
*** G4Exception : em0006
issued by : G4SeltzerBergerModel::ReadData()
Environment variable G4LEDATA not defined
*** Fatal Exception *** core dump ***
-------- EEEE -------- G4Exception-END --------- EEEE ———
/----------------------------------------------------------------------
Prof. Dr. Uwe Pietrzyk
Diplom-Physiker
Institut für Neurowissenschaften und Medizin / INM-4
Forschungszentrum Jülich GmbH
52425 Jülich
Tel: +49-2461-61 4763
Fax: +49-2461-61 2820
Mobil: +49-162-103-4871
eMail: U.Pietrzyk at fz-juelich.de<mailto:U.Pietrzyk at fz-juelich.de>
http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html
&
Bergische Universität Wuppertal
Fachbereich C - Physik / D.08.01
Gaußstr. 20
42097 Wuppertal
Tel: +49-(0)202-439-3523
Fax: +49-(0)202-439-2811
eMail: Uwe.Pietrzyk at physik.uni-wuppertal.de<mailto:Uwe.Pietrzyk at physik.uni-wuppertal.de>
http://www.medizinphysik.uni-wuppertal.de<http://www.medizinphysik.uni-wuppertal.de/>
----------------------------------------------------------------------/
On 12 May 2014, at 09:24, Debendranath Sahoo <deba999 at gmail.com<mailto:deba999 at gmail.com>> wrote:
May 12
Puttaparthy
Dear Dr Pietrzyk,
I am stuck at running your example in Edugate. I shall be most grateful if you could advise me how to make it run. What I got on my terminal is copied below.
Also, do youu have any upgradation of Edugate?
Sincerely yours,
D. Sahoo
ds at ananth-Precision-T5600:~/Desktop/gate-learning/EduGATE_15112011/Gamma_Camera$ Gate Gamma_Camera.mac
[G4]
[G4] *************************************************************
[G4] Geant4 version Name: geant4-09-05-patch-02 (22-October-2012)
[G4] Copyright : Geant4 Collaboration
[G4] Reference : NIM A 506 (2003), 250-303
[G4] WWW : http://cern.ch/geant4
[G4] *************************************************************
[G4]
[Core-0] Initialization of geometry
[Core-0] Initialization of physics
[Core-0] Initialization of actors
[Core-0]
[Core-0] **********************************************************************
[Core-0] GATE version name: gate_v6.2
[Core-0] Copyright : OpenGATE Collaboration
[Core-0] Reference : Phys. Med. Biol. 49 (2004) 4543-4561
[Core-0] Reference : Phys. Med. Biol. 56 (2011) 881-901
[Core-0] WWW : http://www.opengatecollaboration.org<http://www.opengatecollaboration.org/>
[Core-0] **********************************************************************
[Core-0]
[Core-0] Starting macro Gamma_Camera.mac
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--10-100-75-75-m-60-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--11-80-100-100-m-60-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--12-120-75-75-m-70-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--14-100-100-100-m-90-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--17-120-100-100-m-100-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--18-180-75-75-m-110-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--20-140-100-100-m-110-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--24-240-75-75-m-150-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--25-180-100-100-m-150-iso8859-1
G4OpenGLXViewer: XLoadQueryFont failed for font
-adobe-courier-bold-r-normal--34-240-100-100-m-200-iso8859-1
/tracking/storeTrajectory 1
Attributes available for modeling and filtering with
"/vis/modeling/trajectories/create/drawByAttribute" and
"/vis/filtering/trajectories/create/attributeFilter" commands:
G4Trajectory:
Charge (Ch): unit: e+ (G4double)
Track ID (ID): G4int
Initial kinetic energy (IKE): G4BestUnit (G4double)
Initial momentum magnitude (IMag): G4BestUnit (G4double)
Initial momentum (IMom): G4BestUnit (G4ThreeVector)
No. of points (NTP): G4int
PDG Encoding (PDG): G4int
Parent ID (PID): G4int
Particle Name (PN): G4String
G4TrajectoryPoint:
Position (Pos): G4BestUnit (G4ThreeVector)
WARNING: Trajectory storing has been requested. This action may be
reversed with "/tracking/storeTrajectory 0".
WARNING: The vis manager will keep up to 20 events.
This may use a lot of memory.
It may be changed with, e.g., "/vis/scene/endOfEventAction accumulate 10".
GateDetectorConstruction::insertARFSD entered
created a ARF Sensivitive Detector
created command /gate/systems/SPECThead/arf/setARFStage
ABSLENGTH
1.84e-06 50000
4.08e-06 50000
RINDEX
1.84e-06 1.00028
4.08e-06 1.00028
GetDirectoryName()+ setHeight = /gate/hole/geometry/setHeight
GATE object: 'systems/SPECThead'
Components:
GATE object: 'systems/SPECThead/base'
Attached to volume: SPECThead
Nb of children: 1
GATE object: 'systems/SPECThead/crystal'
Attached to volume: crystal
Nb of children: 1
GATE object: 'systems/SPECThead/pixel'
Attached to volume: ---
<!> *** WARNING *** <!> Unknown process: MultipleScattering
<!> *** WARNING *** <!> Unknown process: MultipleScattering
List of Enabled processes:
=== Process: PhotoElectric ===
Particle: gamma
* Model(s):
- StandardModel
=== Process: RadioactiveDecay ===
Particle: GenericIon
=== Process: RayleighScattering ===
Particle: gamma
* Model(s):
- PenelopeModel
=== Process: Bremsstrahlung ===
Particle: e+
* Model(s):
- StandardModel
Particle: e-
* Model(s):
- StandardModel
=== Process: Compton ===
Particle: gamma
* Model(s):
- StandardModel
=== Process: PositronAnnihilation ===
Particle: e+
=== Process: ElectronIonisation ===
Particle: e+
* Model(s):
- StandardModel
Particle: e-
* Model(s):
- StandardModel
List of initialized processes:
[Core-0] Initialization of geometry
Nb of children: 0
G4PhysicalVolumeModel::Validate(): A volume of the same name and
copy number ("world_phys", copy 0) still exists and is being used.
But it is not the same volume you originally specified
in /vis/scene/add/.
[Core-0] Initialization of physics
[Core-0] Initialization of actors
GateSourceMgr::ListSources: List of the sources in the source manager
Source --------------> GammaSource
ID : 0
type : gps
activity (Bq) : 1000
startTime (s) : 0
time (s) : 0
forcedUnstable : 0
forcedHalfLife (s) : -0.693147
verboseLevel : 0
relative to vol : World
----------------------
Source --------------> GammaSource2
ID : 1
type : gps
activity (Bq) : 1000
startTime (s) : 0
time (s) : 0
forcedUnstable : 0
forcedHalfLife (s) : -0.693147
verboseLevel : 0
relative to vol : World
----------------------
Source --------------> GammaSource3
ID : 2
type : gps
activity (Bq) : 1000
startTime (s) : 0
time (s) : 0
forcedUnstable : 0
forcedHalfLife (s) : -0.693147
verboseLevel : 0
relative to vol : World
----------------------
Confirming confinement to volume 'source_vol_phys'...
Confirming confinement to volume 'source_vol_phys'...
Confirming confinement to volume 'source_vol_phys'...
[Acquisition-0]
[Acquisition-0] ============= Source initialization =============
[Acquisition-0]
[Acquisition-0] ============= Acquisition starts! =============
[Acquisition-0] Simulation start time = 0 sec
[Acquisition-0] Simulation end time = 10 sec
[Acquisition-0] Simulation will have = 10 run(s)
--------- Ranlux engine status ---------
Initial seed = -3175806219143625068
randoms[] = 0.764525
0.140098
0.984555
0.742315
0.863656
0.187727
0.185775
0.306394
0.817862
0.767398
0.236854
0.879323
carry = 0, index = 8
luxury = 1 pDiscard = 202
----------------------------------------
[Acquisition-0]
[Acquisition-0] Slice 0 from 0 to 1 s [slice=1 s], final stop at 10 s.
-------- EEEE ------- G4Exception-START -------- EEEE -------
*** G4Exception : em0006
issued by : G4SeltzerBergerModel::ReadData()
Environment variable G4LEDATA not defined
*** Fatal Exception *** core dump ***
-------- EEEE -------- G4Exception-END --------- EEEE -------
*** G4Exception: Aborting execution ***
Aborted (core dumped)
ds at ananth-Precision-T5600:~/Desktop/gate-learning/EduGATE_15112011/Gamma_Camera$
--
Dr Debendranath Sahoo
Honorary Professor
Physics Department
Sri Sathya Sai Institute of Higher Learning
Prashanthi Nilayam
Puttaparthy
A.P. 515 134
e-mail: deba999 at gmail.com<mailto:deba999 at gmail.com>
Mobile: 094945-43026
------------------------------------------------------------------------------------------------
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Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher
Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
Prof. Dr. Sebastian M. Schmidt
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