[Gate-users] problem with voxelez the phantom and the source

Marc Chamberland MarcChamberland at cmail.carleton.ca
Tue Mar 5 17:54:42 CET 2013


Hi,

Gate is already telling you that a few things are wrong.

Here, it says that you used the wrong name for the physics processes (assuming you are running Gate v6.2)

>  <!> *** WARNING *** <!>  Unknown process: PositronAnnihilationStd
>  <!> *** WARNING *** <!>  Unknown process: MultipleScattering
>  <!> *** WARNING *** <!>  Unknown process: MultipleScattering

For positron annihilation, you should use:

/gate/physics/addProcess PositronAnnihilation  e+

For multiple scattering, you should use:

/gate/physics/addProcess eMultipleScattering e-
/gate/physics/addProcess eMultipleScattering e+

Please refer to the user guide: http://wiki.opengatecollaboration.org/index.php/Users_Guide_V6.2:Setting_up_the_physics#Positron_and_electron_annihilation


Also, Gate is complaining that it cannot open some of your header file:

> '!ror: Could not open header file 'm001-IM00120.i33

In fact, it seems like it's trying to open your image file (.i33) instead of the header file (.h33). You'll want to have a close look at this and make sure you're supplying the correct files and the correct paths. I seem to remember Gate having trouble with relative paths to these files (I think), so you might want to investigate.

Marc



__________________________

Marc Chamberland, MSc
PhD candidate
Department of Physics
Carleton University
Ottawa (ON)

On 2013-03-05, at 11:34 AM, mariam zoubair <zoubair-mariam at hotmail.fr>
 wrote:

> 
> Dear Gate users 
> 
> I try to follow all the steps to run CT scanner, I have an image of 512 x 512 pixels. I'm voxelez the phantom and the source (position = -256, -256, 0) but I have not seen any interaction and I have this message.
> 
> 
> Can you help me
> 
> Thank you 
> 
> 
> /tracking/storeTrajectory 1
> Attributes available for modeling and filtering with
>   "/vis/modeling/trajectories/create/drawByAttribute" and
>   "/vis/filtering/trajectories/create/attributeFilter" commands:
> G4Trajectory:
>   Charge (Ch): unit: e+ (G4double)
>   Track ID (ID): G4int
>   Initial kinetic energy (IKE): G4BestUnit (G4double)
>   Initial momentum magnitude (IMag): G4BestUnit (G4double)
>   Initial momentum (IMom): G4BestUnit (G4ThreeVector)
>   No. of points (NTP): G4int
>  
>  
>    PDG Encoding (PDG): G4int
>   Parent ID (PID): G4int
>   Particle Name (PN): G4String
> G4TrajectoryPoint:
>   Position (Pos): G4BestUnit (G4ThreeVector)
> WARNING: Trajectory storing has been requested.  This action may be
>   reversed with "/tracking/storeTrajectory 0".
> WARNING: The vis manager will keep up to 100 events.
>   This may use a lot of memory.
>   It may be changed with, e.g., "/vis/scene/endOfEventAction accumulate 10".
>  CREATED THE COMMAND /gate/systems/cylindricalPET/addAnewRsector
>  Call VoxelParameterized::InsertReader
>  Range Translator
>         Range   0 : imageValue in [    0.000e+00 , 1.500e+03 ]  ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01)
>         Range   1 : imageValue in [    1.501e+03 , 2.250e+03 ]  ---> material Water, visibility 1, coulour (1.000e+00,0.000e+00,0.000e+00,2.000e-01)
>         Range   2 : imageValue in [    2.251e+03 , 2.750e+03 ]  ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01)
>         Range   3 : imageValue in [    2.751e+03 , 3.848e+03 ]  ---> material RibBone, visibility 1, coulour (0.000e+00,0.000e+00,1.000e+00,2.000e-01)
> ', assuming default BIGENDIAN'LITTLEENDIAN
>  
> 'nrecognised type name 'unsigned integer
>  Header read from       'CT-IM00120_uint16.h33'
> 'Data file name         'm001-IM00120.i33
>  Nb of planes:           1
>  Nb of pixels per plane: 512 512
>  Pixel size:             4.590e-01 4.590e-01
>  Slice thickness:        2.179e+00
>  Matrix size:            2.350e+02 2.350e+02
>  Data type:              
>  Data byte order:        BIGENDIAN
>  
>  
> '!ror: Could not open header file 'm001-IM00120.i33
>  <!> *** WARNING *** <!>  Unknown process: PositronAnnihilationStd
>  <!> *** WARNING *** <!>  Unknown process: MultipleScattering
>  <!> *** WARNING *** <!>  Unknown process: MultipleScattering
>  
> List of Enabled processes:
>  
>  
>    ===  Process: PhotoElectric  ===
> Particle: gamma
>     * Model(s):
>        - StandardModel
>  
>    ===  Process: Compton  ===
> Particle: gamma
>     * Model(s):
>        - StandardModel
>  
>    ===  Process: Bremsstrahlung  ===
> Particle: e+
>     * Model(s):
>        - StandardModel
> Particle: e-
>     * Model(s):
>        - StandardModel
>  
>    ===  Process: ElectronIonisation  ===
> Particle: e+
>     * Model(s):
>        - StandardModel
> Particle: e-
>     * Model(s):
>        - StandardModel
>  
> List of initialized processes:
>  
> [Core-0] Initialization of geometry
> G4PhysicalVolumeModel::Validate(): A volume of the same name and
>   copy number ("world_phys", copy 0) still exists and is being used.
>   But it is not the same volume you originally specified
>   in /vis/scene/add/.
> [Core-0] Initialization of physics
> [Core-0] Initialization of actors
> GATE object:        'systems/cylindricalPET'
>  
>  Components:    
>  
> GATE object:        'systems/cylindricalPET/base'
> Attached to volume: cylindricalPET
> Nb of children:       1
>  
>         GATE object:        'systems/cylindricalPET/rsector'
>         Attached to volume: head
>         Nb of children:       1
>  
>                 GATE object:        'systems/cylindricalPET/module'
>                 Attached to volume: ---
>                 Nb of children:       1
>  
>                         GATE object:        'systems/cylindricalPET/submodule'
>  GATE object:        'systems/cylindricalPET/submodule'
>                         Attached to volume: block
>                         Nb of children:       1
>  
>                                 GATE object:        'systems/cylindricalPET/crystal'
>                                 Attached to volume: crystal
>                                 Nb of children:       4
>  
>                                         GATE object:        'systems/cylindricalPET/layer0'
>                                         Attached to volume: LYSO
>                                         Nb of children:       0
>  
>                                         GATE object:        'systems/cylindricalPET/layer1'
>                                         Attached to volume: LSO
>                                         Nb of children:       0
>  
>                                         GATE object:        'systems/cylindricalPET/layer2'
>                                         Attached to volume: ---
>                                         Nb of children:       0
>  
>                                         GATE object:        'systems/cylindricalPET/layer3'
>                                         Attached to volume: ---
>                                         Nb of children:       0
> geometrical design type: 1
> ring diameter: -1.750e+01 cm 
> rsector axial pitch: 0.000e+00 fm 
> rsector azimuthal pitch: -4.500e+01 degree
> rsector tangential size: 2.000e+00 cm 
> rsector axial size: 2.530e+01 cm 
> module axial size: 2.530e+01 cm 
> module tangential size: 2.000e+00 cm 
>  module axial pitch: 0.000e+00 fm 
> module tangential pitch: 0.000e+00 fm 
> submodule axial size: 1.900e+00 cm 
> submodule tangential size: 2.000e+00 cm 
> submodule axial pitch: 1.950e+00 cm 
> submodule tangential pitch: 0.000e+00 fm 
> crystal radial size: 2.200e+00 mm 
> crystal axial size: 2.200e+00 mm 
> crystal tangential size: 2.000e+00 cm 
> crystal axial pitch: 2.400e+00 mm 
> crystal tangential pitch: 0.000e+00 fm 
> layer0 radial size: 2.200e+00 mm 
> in layer0 interaction length: 1.100e+00 mm 
> layer1 radial size: 2.200e+00 mm 
> in layer1 interaction length: 1.100e+00 mm 
> Axial nb of rsectors: 1
> Azimuthal nb of rsectors: 8
> Axial nb of modules: 1
> Tangential nb of modules: 1
> Axial nb of submodules: 13
> Tangential nb of submodules: 1
> Axial nb of crystals: 8
> Tangential nb of crystals: 1
> Radial nb of layers: 2
>  Range Translator
>         Range   0 : imageValue in [    0.000e+00 , 1.500e+03 ]  ---> activity (Bq) 0.000e+00
>         Range   1 : imageValue in [    1.501e+03 , 2.250e+03 ]  ---> activity (Bq) 1.000e+01
>         Range   2 : imageValue in [    2.251e+03 , 2.750e+03 ]  ---> activity (Bq) 2.000e+01
>         Range   3 : imageValue in [    2.751e+03 , 3.848e+03 ]  ---> activity (Bq) 3.000e+01
> GateSourceVoxelImageReader::ReadFile : fileName: CT-IM00120_uint16.h33
>  
> ', assuming default BIGENDIAN'LITTLEENDIAN
>  
> 'nrecognised type name 'unsigned integer
>  Header read from       'CT-IM00120_uint16.h33'
> 'Data file name         'm001-IM00120.i33
>  Nb of planes:           1
>  Nb of pixels per plane: 512 512
>  Pixel size:             4.590e-01 4.590e-01
>  Slice thickness:        2.179e+00
>  Matrix size:            2.350e+02 2.350e+02
>  Data type:              
>  Data byte order:        BIGENDIAN
>  
>  
> '!ror: Could not open header file 'm001-IM00120.i33
>  **** Error: Volume does not exist **** 
>  Ignoring confine condition
> Source ---------------> voxel_brain
>   ID                  : 0
>   type                : backtoback
>   startTime (s)       : 0.000e+00
>   time (s)            : 0.000e+00
>   forcedUnstable      : 0
>   verboseLevel        : 0
> ----------------------- 
>   Voxel reader ---------->   number of voxels       : 0
>   total activity (Bq)    : 0.000e+00
>   position  (mm)         : 0.000e+00 0.000e+00 0.000e+00
>   voxel size  (mm)    : 1.000e+00 1.000e+00 1.000e+00
> Source --------------> voxel_brain
>   ID                 : 0
>   type               : backtoback
>   activity (Bq)      : 0.000e+00
>   startTime (s)      : 0.000e+00
>   time (s)           : 0.000e+00
>   forcedUnstable     : 0
>   forcedHalfLife (s) : -6.931e-01
>   verboseLevel       : 0
>   relative to vol    : World
> ---------------------- 
>  
>     GPS info ----------------> 
>     particle                 : gamma
>     SourcePosType            : Point
>     Shape                    : NULL
>     halfx,halfy,halfz  (mm)  : 0.000e+00 0.000e+00 0.000e+00
>     Radius             (mm)  : 0.000e+00
>     CentreCoords       (mm)  : 0.000e+00 0.000e+00 0.000e+00
>     EnergyDisType            : Mono
>     AngleDisType            : iso
>     MinTheta, MaxTheta (deg) : 0.000e+00 1.800e+02
>     MinPhi, MaxPhi     (deg) : 0.000e+00 3.600e+02
>     -------------------------- 
>  
> GateSourceMgr::ListSources: List of the sources in the source manager
> Source ---------------> voxel_brain
>   ID                  : 0
>   type                : backtoback
>   startTime (s)       : 0.000e+00
>   time (s)            : 0.000e+00
>   forcedUnstable      : 0
>  
>  verboseLevel        : 0
> ----------------------- 
> ***** COMMAND NOT FOUND </gate/output/root/setRootdelayFlag 1> *****
>  
> ***** Batch is interrupted!! *****
> [Acquisition-0]                                      
> [Acquisition-0] ============= Source initialization =============
> [Acquisition-0]                                      
> [Acquisition-0] ============= Acquisition starts! =============
> [Acquisition-0] Simulation start time = 0 sec
> [Acquisition-0] Simulation end time   = 2.5 sec
> [Acquisition-0] Simulation will have  = 1 run(s)
> [Acquisition-0] 
> [Acquisition-0] Slice 0 from 0 to 2.5 s [slice=2.5 s], final stop at 2.5 s.
>  
> PhotoElectric:   for  gamma    SubType= 12
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>        PhotoElectric :  Emin= 0.000e+00 eV    Emax= 1.000e+01 TeV
>  
> Compton:   for  gamma    SubType= 13
>       Lambda tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins, spline: 1
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>        Klein-Nishina :  Emin= 0.000e+00 eV    Emax= 1.000e+01 TeV
>  
> Bremsstrahlung:   for  e-    SubType= 3
>       dE/dx and range tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins
>       Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
>       LPM flag: 1 for E > 1.000e+00 GeV
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>              eBremSB :  Emin= 0.000e+00 eV    Emax= 1.000e+00 GeV   AngularGenUrban
>             eBremLPM :  Emin= 1.000e+00 GeV   Emax= 1.000e+01 TeV   AngularGenUrban
>  
> ElectronIonisation:   for  e-    SubType= 2
>       dE/dx and range tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins
>       Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
>       finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>         MollerBhabha :  Emin= 0.000e+00 eV    Emax= 1.000e+01 TeV
>  
> Bremsstrahlung:   for  e+    SubType= 3
>       dE/dx and range tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins
>       Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
>       LPM flag: 1 for E > 1.000e+00 GeV
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>              eBremSB :  Emin= 0.000e+00 eV    Emax= 1.000e+00 GeV   AngularGenUrban
>             eBremLPM :  Emin= 1.000e+00 GeV   Emax= 1.000e+01 TeV   AngularGenUrban
>  
> ElectronIonisation:   for  e+    SubType= 2
>       dE/dx and range tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins
>       Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
>       finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>         MollerBhabha :  Emin= 0.000e+00 eV    Emax= 1.000e+01 TeV
> 1 event has been kept for refreshing and/or reviewing.
>      User simulation time (sec)   := 4.900e-01
>      Real simulation time (sec)   := 2.860e+00
>      System simulation time (sec) := 6.000e-02
> [Core-0] End of macro hrrt.mac
> GateOutputMgr deleting...
> Graphics systems deleted.
> Visualization Manager deleting...
> WARNING - Attempt to delete the physical volume store while geometry closed !
> WARNING - Attempt to delete the logical volume store while geometry closed !
> WARNING - Attempt to delete the solid store while geometry closed !
> WARNING - Attempt to delete the region store while geometry closed !
>  
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> 
> From: zoubair-mariam at hotmail.fr
> To: gate-users at lists.opengatecollaboration.org
> Subject: problem with voxelez the phantom and the source
> Date: Tue, 5 Mar 2013 16:21:43 +0000
> 
> Dear Gate users 
> 
> I try to follow all the steps to run CT scanner, I have an image of 512 x 512 pixels. I'm voxelez the phantom and the source (position = -256, -256, 0) but I have not seen any interaction and I have this message.
> 
> 
> Can you help me
> 
> Thank you 
> 
> 
> 
> /tracking/storeTrajectory 1
> Attributes available for modeling and filtering with
>   "/vis/modeling/trajectories/create/drawByAttribute" and
>   "/vis/filtering/trajectories/create/attributeFilter" commands:
> G4Trajectory:
>   Charge (Ch): unit: e+ (G4double)
>   Track ID (ID): G4int
>   Initial kinetic energy (IKE): G4BestUnit (G4double)
>   Initial momentum magnitude (IMag): G4BestUnit (G4double)
>   Initial momentum (IMom): G4BestUnit (G4ThreeVector)
>   No. of points (NTP): G4int
> 
>  
>    PDG Encoding (PDG): G4int
>   Parent ID (PID): G4int
>   Particle Name (PN): G4String
> G4TrajectoryPoint:
>   Position (Pos): G4BestUnit (G4ThreeVector)
> WARNING: Trajectory storing has been requested.  This action may be
>   reversed with "/tracking/storeTrajectory 0".
> WARNING: The vis manager will keep up to 100 events.
>   This may use a lot of memory.
>   It may be changed with, e.g., "/vis/scene/endOfEventAction accumulate 10".
>  CREATED THE COMMAND /gate/systems/cylindricalPET/addAnewRsector
>  Call VoxelParameterized::InsertReader
>  Range Translator
>         Range   0 : imageValue in [    0.000e+00 , 1.500e+03 ]  ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01)
>         Range   1 : imageValue in [    1.501e+03 , 2.250e+03 ]  ---> material Water, visibility 1, coulour (1.000e+00,0.000e+00,0.000e+00,2.000e-01)
>         Range   2 : imageValue in [    2.251e+03 , 2.750e+03 ]  ---> material Air, visibility 1, coulour (0.000e+00,1.000e+00,0.000e+00,2.000e-01)
>         Range   3 : imageValue in [    2.751e+03 , 3.848e+03 ]  ---> material RibBone, visibility 1, coulour (0.000e+00,0.000e+00,1.000e+00,2.000e-01)
> ', assuming default BIGENDIAN'LITTLEENDIAN
> 
> 'nrecognised type name 'unsigned integer
>  Header read from       'CT-IM00120_uint16.h33'
> 'Data file name         'm001-IM00120.i33
>  Nb of planes:           1
>  Nb of pixels per plane: 512 512
>  Pixel size:             4.590e-01 4.590e-01
>  Slice thickness:        2.179e+00
>  Matrix size:            2.350e+02 2.350e+02
>  Data type:              
>  Data byte order:        BIGENDIAN
> 
> 
> '!ror: Could not open header file 'm001-IM00120.i33
>  <!> *** WARNING *** <!>  Unknown process: PositronAnnihilationStd
>  <!> *** WARNING *** <!>  Unknown process: MultipleScattering
>  <!> *** WARNING *** <!>  Unknown process: MultipleScattering
> 
>  
>  
>  List of Enabled processes:
> 
> 
>    ===  Process: PhotoElectric  ===
> Particle: gamma
>     * Model(s):
>        - StandardModel
> 
>    ===  Process: Compton  ===
> Particle: gamma
>     * Model(s):
>        - StandardModel
> 
>    ===  Process: Bremsstrahlung  ===
> Particle: e+
>     * Model(s):
>        - StandardModel
> Particle: e-
>     * Model(s):
>        - StandardModel
> 
>    ===  Process: ElectronIonisation  ===
> Particle: e+
>     * Model(s):
>        - StandardModel
> Particle: e-
>     * Model(s):
>        - StandardModel
> 
> List of initialized processes:
> 
> [Core-0] Initialization of geometry
> G4PhysicalVolumeModel::Validate(): A volume of the same name and
>   copy number ("world_phys", copy 0) still exists and is being used.
>   But it is not the same volume you originally specified
>   in /vis/scene/add/.
> [Core-0] Initialization of physics
> [Core-0] Initialization of actors
> 
> GATE object:        'systems/cylindricalPET'
>  
>  Components:    
> 
> GATE object:        'systems/cylindricalPET/base'
> Attached to volume: cylindricalPET
> Nb of children:       1
> 
>         GATE object:        'systems/cylindricalPET/rsector'
>         Attached to volume: head
>         Nb of children:       1
> 
>                 GATE object:        'systems/cylindricalPET/module'
>                 Attached to volume: ---
>                 Nb of children:       1
> 
>                         GATE object:        'systems/cylindricalPET/submodule'
>                         Attached to volume: block
>                         Nb of children:       1
> 
>                                 GATE object:        'systems/cylindricalPET/crystal'
>                                 Attached to volume: crystal
>                                 Nb of children:       4
> 
>                                         GATE object:        'systems/cylindricalPET/layer0'
>                                         Attached to volume: LYSO
>                                         Nb of children:       0
> 
>                                         GATE object:        'systems/cylindricalPET/layer1'
>                                         Attached to volume: LSO
>                                         Nb of children:       0
> 
>                                         GATE object:        'systems/cylindricalPET/layer2'
>                                         Attached to volume: ---
>                                         Nb of children:       0
> 
>                                         GATE object:        'systems/cylindricalPET/layer3'
>                                         Attached to volume: ---
>                                         Nb of children:       0
> geometrical design type: 1
> ring diameter: -1.750e+01 cm 
> rsector axial pitch: 0.000e+00 fm 
> rsector azimuthal pitch: -4.500e+01 degree
> rsector tangential size: 2.000e+00 cm 
> rsector axial size: 2.530e+01 cm 
> module axial size: 2.530e+01 cm 
> module tangential size: 2.000e+00 cm 
>  module axial pitch: 0.000e+00 fm 
> module tangential pitch: 0.000e+00 fm 
> submodule axial size: 1.900e+00 cm 
> submodule tangential size: 2.000e+00 cm 
> submodule axial pitch: 1.950e+00 cm 
> submodule tangential pitch: 0.000e+00 fm 
> crystal radial size: 2.200e+00 mm 
> crystal axial size: 2.200e+00 mm 
> crystal tangential size: 2.000e+00 cm 
> crystal axial pitch: 2.400e+00 mm 
> crystal tangential pitch: 0.000e+00 fm 
> layer0 radial size: 2.200e+00 mm 
> in layer0 interaction length: 1.100e+00 mm 
> layer1 radial size: 2.200e+00 mm 
> in layer1 interaction length: 1.100e+00 mm 
> Axial nb of rsectors: 1
> Azimuthal nb of rsectors: 8
> Axial nb of modules: 1
> Tangential nb of modules: 1
> Axial nb of submodules: 13
> Tangential nb of submodules: 1
> Axial nb of crystals: 8
> Tangential nb of crystals: 1
> Radial nb of layers: 2
>  Range Translator
>         Range   0 : imageValue in [    0.000e+00 , 1.500e+03 ]  ---> activity (Bq) 0.000e+00
>         Range   1 : imageValue in [    1.501e+03 , 2.250e+03 ]  ---> activity (Bq) 1.000e+01
>         Range   2 : imageValue in [    2.251e+03 , 2.750e+03 ]  ---> activity (Bq) 2.000e+01
>         Range   3 : imageValue in [    2.751e+03 , 3.848e+03 ]  ---> activity (Bq) 3.000e+01
> GateSourceVoxelImageReader::ReadFile : fileName: CT-IM00120_uint16.h33
> ', assuming default BIGENDIAN'LITTLEENDIAN
> 
> 'nrecognised type name 'unsigned integer
>  Header read from       'CT-IM00120_uint16.h33'
> 'Data file name         'm001-IM00120.i33
>  Nb of planes:           1
>  Nb of pixels per plane: 512 512
>  Pixel size:             4.590e-01 4.590e-01
>  Slice thickness:        2.179e+00
>  Matrix size:            2.350e+02 2.350e+02
>  Data type:              
>  Data byte order:        BIGENDIAN
> 
> 
> '!ror: Could not open header file 'm001-IM00120.i33
>  **** Error: Volume does not exist **** 
>  Ignoring confine condition
> Source ---------------> voxel_brain
>   ID                  : 0
>   type                : backtoback
>   startTime (s)       : 0.000e+00
>   time (s)            : 0.000e+00
>   forcedUnstable      : 0
>   verboseLevel        : 0
> ----------------------- 
>   Voxel reader ---------->   number of voxels       : 0
>   total activity (Bq)    : 0.000e+00
>   position  (mm)         : 0.000e+00 0.000e+00 0.000e+00
>   voxel size  (mm)    : 1.000e+00 1.000e+00 1.000e+00
> Source --------------> voxel_brain
>   ID                 : 0
>   type               : backtoback
>   activity (Bq)      : 0.000e+00
>   startTime (s)      : 0.000e+00
>   time (s)           : 0.000e+00
>   forcedUnstable     : 0
>   forcedHalfLife (s) : -6.931e-01
>   verboseLevel       : 0
>   relative to vol    : World
> ---------------------- 
> 
>     GPS info ----------------> 
>     particle                 : gamma
>     SourcePosType            : Point
>     Shape                    : NULL
>     halfx,halfy,halfz  (mm)  : 0.000e+00 0.000e+00 0.000e+00
>     Radius             (mm)  : 0.000e+00
>     CentreCoords       (mm)  : 0.000e+00 0.000e+00 0.000e+00
>     EnergyDisType            : Mono
>     AngleDisType            : iso
>     MinTheta, MaxTheta (deg) : 0.000e+00 1.800e+02
>     MinPhi, MaxPhi     (deg) : 0.000e+00 3.600e+02
>     -------------------------- 
> 
> GateSourceMgr::ListSources: List of the sources in the source manager
> Source ---------------> voxel_brain
>   ID                  : 0
>   type                : backtoback
>   startTime (s)       : 0.000e+00
>   time (s)            : 0.000e+00
>   forcedUnstable      : 0
> 
>  verboseLevel        : 0
> ----------------------- 
> ***** COMMAND NOT FOUND </gate/output/root/setRootdelayFlag 1> *****
> 
> ***** Batch is interrupted!! *****
> [Acquisition-0]                                      
> [Acquisition-0] ============= Source initialization =============
> [Acquisition-0]                                      
> [Acquisition-0] ============= Acquisition starts! =============
> [Acquisition-0] Simulation start time = 0 sec
> [Acquisition-0] Simulation end time   = 2.5 sec
> [Acquisition-0] Simulation will have  = 1 run(s)
> [Acquisition-0] 
> [Acquisition-0] Slice 0 from 0 to 2.5 s [slice=2.5 s], final stop at 2.5 s.
> 
> PhotoElectric:   for  gamma    SubType= 12
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>        PhotoElectric :  Emin= 0.000e+00 eV    Emax= 1.000e+01 TeV
> 
> Compton:   for  gamma    SubType= 13
>       Lambda tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins, spline: 1
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>        Klein-Nishina :  Emin= 0.000e+00 eV    Emax= 1.000e+01 TeV
> 
> Bremsstrahlung:   for  e-    SubType= 3
>       dE/dx and range tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins
>       Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
>       LPM flag: 1 for E > 1.000e+00 GeV
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>              eBremSB :  Emin= 0.000e+00 eV    Emax= 1.000e+00 GeV   AngularGenUrban
>             eBremLPM :  Emin= 1.000e+00 GeV   Emax= 1.000e+01 TeV   AngularGenUrban
> 
> ElectronIonisation:   for  e-    SubType= 2
>       dE/dx and range tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins
>       Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
>       finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>         MollerBhabha :  Emin= 0.000e+00 eV    Emax= 1.000e+01 TeV
> 
> Bremsstrahlung:   for  e+    SubType= 3
>       dE/dx and range tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins
>       Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
>       LPM flag: 1 for E > 1.000e+00 GeV
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>              eBremSB :  Emin= 0.000e+00 eV    Emax= 1.000e+00 GeV   AngularGenUrban
>             eBremLPM :  Emin= 1.000e+00 GeV   Emax= 1.000e+01 TeV   AngularGenUrban
> 
> ElectronIonisation:   for  e+    SubType= 2
>       dE/dx and range tables from 1.000e+02 eV  to 1.000e+01 TeV in 77 bins
>       Lambda tables from threshold to 1.000e+01 TeV in 77 bins, spline: 1
>       finalRange(mm)= 1.000e+00, dRoverRange= 2.000e-01, integral: 1, fluct: 1, linLossLimit= 1.000e-02
>       ===== EM models for the G4Region  DefaultRegionForTheWorld ======
>         MollerBhabha :  Emin= 0.000e+00 eV    Emax= 1.000e+01 TeV
> 1 event has been kept for refreshing and/or reviewing.
>      User simulation time (sec)   := 4.900e-01
>      Real simulation time (sec)   := 2.860e+00
>      System simulation time (sec) := 6.000e-02
> [Core-0] End of macro hrrt.mac
> GateOutputMgr deleting...
> Graphics systems deleted.
> Visualization Manager deleting...
> WARNING - Attempt to delete the physical volume store while geometry closed !
> WARNING - Attempt to delete the logical volume store while geometry closed !
> WARNING - Attempt to delete the solid store while geometry closed !
> WARNING - Attempt to delete the region store while geometry closed !
> 
> 
>  
> 
> _______________________________________________
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> Gate-users at lists.opengatecollaboration.org
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