[Gate-users] cluser tool gjs

[Hermann Fuchs]

Hello

This problem has nothing to do with gjs.
It seems your cluster does not know where to look for the library. Are
you sending along the environmental variables?

Cheers,
Hermann
On Thu, 2013-06-13 at 21:59 +0800, 刘斌信件 wrote:

> hi David,
>     I  try to use cluster tools "gjs",    I  utilize the commands " gjs -numberofsplits 5 -clusterplatform openmosix  mac/total.mac , and got the output file of " total.submit ",  but when I  execut the it by "sudo ./total.submit"
> the errors are coming , the folllowing are output:
> /Gatedir/bin/Linux-g++/Gate : error while loading shared libraries: libGate.so: cannot open shared object file: No such file or directory?
> 
> I found the libGate.so in the file directory "${GATEHOME}/tmp/${G4SYSTEM}/Gate" ,and I added the directory to the PATH  or LD_LIBRARY_PATH , however the problem is still there , I don't know what  cause this problem.
> 
> Another prblem is the vv, I used Vv converting Ct.dcm  data to .hdr or img data ,but the derived .hdr file cann't supported by Gate , it showed that the Gate didn't support voxel type of  converted file " .hdr" . 
>  
>   Can you give me a help .  
> Best wishes
> yours 
> Bin.
> 
> 
> 
> 
> ----- Original Message ----- 
> From: <gate-users-request at lists.opengatecollaboration.org>
> To: <gate-users at lists.opengatecollaboration.org>
> Sent: Saturday, June 08, 2013 6:00 PM
> Subject: Gate-users Digest, Vol 85, Issue 6
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> > Today's Topics:
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> >   1. LMF segment fault (??)
> > 
> > 
> > ----------------------------------------------------------------------
> > 
> > Message: 1
> > Date: Fri, 7 Jun 2013 21:37:57 +0800 (GMT+08:00)
> > From: ?? <chenze at impcas.ac.cn>
> > To: gate-users at lists.opengatecollaboration.org
> > Subject: [Gate-users] LMF segment fault
> > Message-ID: <c4cd2a.a207.13f1edb9f4b.Coremail.chenze at impcas.ac.cn>
> > Content-Type: text/plain; charset="gbk"
> > 
> > 
> > Hi,
> >    I have occurred the the problem of LMF output, which is shown below.
> > **************
> >  LMF INIT
> > **************
> >  number of rsectors 1
> >  rsector name  =rsector
> > 
> >  *** Break *** segmentation violation
> >  I wonder how can I fix this problem, thank you for your reply.
> > regards,
> > chenze
> > 
> > 
> > 
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-- 
-------------
DI Hermann Fuchs
Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology
Department of Radiation Oncology
Medical University Vienna
Währinger Gürtel 18-20
A-1090 Wien

Tel.  + 43 / 1 / 40 400 7271
Mail. hermann.fuchs at meduniwien.ac.at
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