[Gate-users] Gate-users Digest, Vol 81, Issue 15

Thu Feb 21 17:31:52 CET 2013

I think ubuntu 12.04 32bit is recommended. However, I successfully installed it on Ubuntu 12.10 32bit as well

Nicola Poles
nicola.poles at gmail.com

On Feb 21, 2013, at 4:03 PM, Saeed Heidary <saeedheidary79 at gmail.com> wrote:

> Hi Hermann
> I think the problem related to the bugs of Linux (centOs 6.2)
> /usr/bin/ld: cannot find -lecat and -lsocket !
> I have seen such problems in forums for ubuntu
> please tell me what kind of Linux you recommend !
> 
> On 2/21/13, gate-users-request at lists.opengatecollaboration.org
> <gate-users-request at lists.opengatecollaboration.org> wrote:
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>> Today's Topics:
>> 
>>   1. ECAT and LMF installation in GATE 6.2 (Saeed Heidary)
>>   2. Re: ECAT and LMF installation in GATE 6.2 (Hermann Fuchs)
>>   3. 32 bit or 64 bit OS for Gate v.6.1? (Shahla Razaghi)
>>   4. Re: 32 bit or 64 bit OS for Gate v.6.1? (Hermann Fuchs)
>> 
>> 
>> ----------------------------------------------------------------------
>> 
>> Message: 1
>> Date: Wed, 20 Feb 2013 14:52:54 +0330
>> From: Saeed Heidary <saeedheidary79 at gmail.com>
>> To: gate-users <gate-users at lists.opengatecollaboration.org>
>> Subject: [Gate-users] ECAT and LMF installation in GATE 6.2
>> Message-ID:
>> 	<CAAwAR=Mpb0-n=jNtej7VJeQ=3eh=QOLMQr+Oey7Qra0zW+=RhQ at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>> 
>> Hi Gate users
>> I am trying to add ecat and lmf to my GATE.6.2
>> but the linking problem appears same  the previous versions!
>> 
>> first ; when I extract the ecat.tar and read the install text file, after
>> running the 'make depend'
>> I have ;
>> [root at saeed2 ecat7]# make depend
>> makedepend -Dunix -O -I. ./*.c ./lib_compress/*.c
>> /bin/sh: makedepend: command not found
>> make: *** [depend] Error 127
>> [root at saeed2 ecat7]#
>> 
>> second when I do the routine mentioned in the installation guide
>> http://wiki.opengatecollaboration.org/index.php/New_Compilation_ProcedureV6.2
>> 
>> entering ;
>> /opt/simulation/ecat7
>> cp Makefile.unix Makefile
>> make
>> mkdir /opt/simulation/ecat7/include
>> cp *.h /opt/simulation/ecat7/include
>> mkdir lib
>> mkdir lib/Linux-g++
>> cp libecat.a lib/Linux-g++/
>> .
>> .
>> cd gate.6.2-build
>> ccmake ../gate_v6.2
>>   (configuring the paths and ecatHome )
>> make
>> make install
>> 
>> all things compile but Linkining error appears as the following;;
>> 
>> [100%] Building CXX object
>> CMakeFiles/Gate.dir/source/general/src/GateClockDependentMessenger.cc.o
>> Linking CXX executable Gate
>> /usr/bin/ld: cannot find -lecat
>> collect2: ld returned 1 exit status
>> make[2]: *** [Gate] Error 1
>> make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
>> make: *** [all] Error 2
>> You have new mail in /var/spool/mail/root
>> [root at localhost gate.6.2-build]#
>> 
>> I am highly appreciated  if any one has a standard procedure to install
>> ecat and lmf;
>> Many thanks in advance
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL:
>> <http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20130220/6a51186b/attachment-0001.html>
>> 
>> ------------------------------
>> 
>> Message: 2
>> Date: Wed, 20 Feb 2013 13:24:31 +0100
>> From: Hermann Fuchs <hermann.fuchs at meduniwien.ac.at>
>> To: gate-users at lists.opengatecollaboration.org
>> Subject: Re: [Gate-users] ECAT and LMF installation in GATE 6.2
>> Message-ID:
>> 	<1361363071.23733.13.camel at strahlen41.strahlen.meduniwien.ac.at>
>> Content-Type: text/plain; charset="UTF-8"
>> 
>> Hi
>> 
>> I presume you have compiled ecat before Gate6_2.
>> If so, you have to specify the ecat path in ccmake...
>> eg.
>> ECAT7_HOME                       /opt/simulation/ecat7
>> LMF_HOME                         /opt/simulation/lmf_3_0
>> 
>> Cheers,
>> Hermann
>> On Wed, 2013-02-20 at 14:52 +0330, Saeed Heidary wrote:
>>> Hi Gate users
>>> I am trying to add ecat and lmf to my GATE.6.2
>>> but the linking problem appears same  the previous versions!
>>> 
>>> 
>>> first ; when I extract the ecat.tar and read the install text file,
>>> after running the 'make depend'
>>> I have ;
>>> [root at saeed2 ecat7]# make depend
>>> makedepend -Dunix -O -I. ./*.c ./lib_compress/*.c
>>> /bin/sh: makedepend: command not found
>>> make: *** [depend] Error 127
>>> [root at saeed2 ecat7]#
>>> 
>>> 
>>> second when I do the routine mentioned in the installation guide
>>> http://wiki.opengatecollaboration.org/index.php/New_Compilation_ProcedureV6.2
>>> 
>>> 
>>> entering ;
>>> /opt/simulation/ecat7
>>> cp Makefile.unix Makefile
>>> make
>>> mkdir /opt/simulation/ecat7/include
>>> cp *.h /opt/simulation/ecat7/include
>>> mkdir lib
>>> mkdir lib/Linux-g++
>>> cp libecat.a lib/Linux-g++/
>>> .
>>> .
>>> cd gate.6.2-build
>>> ccmake ../gate_v6.2
>>>   (configuring the paths and ecatHome )
>>> make
>>> make install
>>> 
>>> 
>>> all things compile but Linkining error appears as the following;;
>>> 
>>> 
>>> [100%] Building CXX object
>>> CMakeFiles/Gate.dir/source/general/src/GateClockDependentMessenger.cc.o
>>> Linking CXX executable Gate
>>> /usr/bin/ld: cannot find -lecat
>>> collect2: ld returned 1 exit status
>>> make[2]: *** [Gate] Error 1
>>> make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
>>> make: *** [all] Error 2
>>> You have new mail in /var/spool/mail/root
>>> [root at localhost gate.6.2-build]#
>>> 
>>> 
>>> I am highly appreciated  if any one has a standard procedure to
>>> install ecat and lmf;
>>> Many thanks in advance
>>> _______________________________________________
>>> Gate-users mailing list
>>> Gate-users at lists.opengatecollaboration.org
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>> 
>> --
>> -------------
>> DI Hermann Fuchs
>> Christian Doppler Laboratory for Medical Radiation Research for Radiation
>> Oncology
>> Department of Radiation Oncology
>> Medical University Vienna
>> W?hringer G?rtel 18-20
>> A-1090 Wien
>> 
>> Tel.  + 43 / 1 / 40 400 7271
>> Mail. hermann.fuchs at meduniwien.ac.at
>> 
>> 
>> 
>> ------------------------------
>> 
>> Message: 3
>> Date: Thu, 21 Feb 2013 07:51:42 +0330
>> From: Shahla Razaghi <shahla1988 at gmail.com>
>> To: GATE-users-request <gate-users at lists.opengatecollaboration.org>
>> Subject: [Gate-users] 32 bit or 64 bit OS for Gate v.6.1?
>> Message-ID:
>> 	<CANS-_3+FDdSkTgAKw9RXCpvd22pZ41TppucYzOMGxH0yn9o=1A at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>> 
>> Dear gate-users,
>> 
>> I am trying to reinstall Gate v.6.1 on Ubuntu 12.04 but I encounter with
>> frequent warning and error messages during installation process. After
>> failing to figure out the cause of error messages, I thought that this
>> problem would be do to OS system which is 32 bit. Is 64 bit OS mandatory
>> for Gate installation?
>> 
>> Thanks,
>> --
>> 
>> Shahla Razaghi
>> Medical Radiation Engineering
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
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>> 
>> ------------------------------
>> 
>> Message: 4
>> Date: Thu, 21 Feb 2013 10:52:41 +0100
>> From: Hermann Fuchs <hermann.fuchs at meduniwien.ac.at>
>> To: gate-users at lists.opengatecollaboration.org
>> Subject: Re: [Gate-users] 32 bit or 64 bit OS for Gate v.6.1?
>> Message-ID:
>> 	<1361440361.15052.10.camel at strahlen41.strahlen.meduniwien.ac.at>
>> Content-Type: text/plain; charset="UTF-8"
>> 
>> Yes, you need a 64bit OS for Gate
>> 
>> Cheers,
>> Hermann
>> 
>> On Thu, 2013-02-21 at 07:51 +0330, Shahla Razaghi wrote:
>>> Dear gate-users,
>>> 
>>> I am trying to reinstall Gate v.6.1 on Ubuntu 12.04 but I encounter
>>> with frequent warning and error messages during installation process.
>>> After failing to figure out the cause of error messages, I thought
>>> that this problem would be do to OS system which is 32 bit. Is 64 bit
>>> OS mandatory for Gate installation?
>>> 
>>> Thanks,
>>> --
>>> 
>>> Shahla Razaghi
>>> Medical Radiation Engineering
>>> 
>>> _______________________________________________
>>> Gate-users mailing list
>>> Gate-users at lists.opengatecollaboration.org
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>> 
>> --
>> -------------
>> DI Hermann Fuchs
>> Christian Doppler Laboratory for Medical Radiation Research for Radiation
>> Oncology
>> Department of Radiation Oncology
>> Medical University Vienna
>> W?hringer G?rtel 18-20
>> A-1090 Wien
>> 
>> Tel.  + 43 / 1 / 40 400 7271
>> Mail. hermann.fuchs at meduniwien.ac.at
>> 
>> 
>> 
>> ------------------------------
>> 
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>> 
>> End of Gate-users Digest, Vol 81, Issue 15
>> ******************************************
>> 
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