[Gate-users] Gate-users Digest, Vol 81, Issue 15

Thu Feb 21 16:03:17 CET 2013

Hi Hermann
I think the problem related to the bugs of Linux (centOs 6.2)
/usr/bin/ld: cannot find -lecat and -lsocket !
I have seen such problems in forums for ubuntu
please tell me what kind of Linux you recommend !

On 2/21/13, gate-users-request at lists.opengatecollaboration.org
<gate-users-request at lists.opengatecollaboration.org> wrote:
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> Today's Topics:
>
>    1. ECAT and LMF installation in GATE 6.2 (Saeed Heidary)
>    2. Re: ECAT and LMF installation in GATE 6.2 (Hermann Fuchs)
>    3. 32 bit or 64 bit OS for Gate v.6.1? (Shahla Razaghi)
>    4. Re: 32 bit or 64 bit OS for Gate v.6.1? (Hermann Fuchs)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 20 Feb 2013 14:52:54 +0330
> From: Saeed Heidary <saeedheidary79 at gmail.com>
> To: gate-users <gate-users at lists.opengatecollaboration.org>
> Subject: [Gate-users] ECAT and LMF installation in GATE 6.2
> Message-ID:
> 	<CAAwAR=Mpb0-n=jNtej7VJeQ=3eh=QOLMQr+Oey7Qra0zW+=RhQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Gate users
> I am trying to add ecat and lmf to my GATE.6.2
> but the linking problem appears same  the previous versions!
>
> first ; when I extract the ecat.tar and read the install text file, after
> running the 'make depend'
>  I have ;
> [root at saeed2 ecat7]# make depend
> makedepend -Dunix -O -I. ./*.c ./lib_compress/*.c
> /bin/sh: makedepend: command not found
> make: *** [depend] Error 127
> [root at saeed2 ecat7]#
>
> second when I do the routine mentioned in the installation guide
> http://wiki.opengatecollaboration.org/index.php/New_Compilation_ProcedureV6.2
>
> entering ;
> /opt/simulation/ecat7
> cp Makefile.unix Makefile
> make
> mkdir /opt/simulation/ecat7/include
> cp *.h /opt/simulation/ecat7/include
> mkdir lib
> mkdir lib/Linux-g++
> cp libecat.a lib/Linux-g++/
> .
> .
> cd gate.6.2-build
> ccmake ../gate_v6.2
>    (configuring the paths and ecatHome )
> make
> make install
>
> all things compile but Linkining error appears as the following;;
>
> [100%] Building CXX object
> CMakeFiles/Gate.dir/source/general/src/GateClockDependentMessenger.cc.o
> Linking CXX executable Gate
> /usr/bin/ld: cannot find -lecat
> collect2: ld returned 1 exit status
> make[2]: *** [Gate] Error 1
> make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
> make: *** [all] Error 2
> You have new mail in /var/spool/mail/root
> [root at localhost gate.6.2-build]#
>
> I am highly appreciated  if any one has a standard procedure to install
> ecat and lmf;
> Many thanks in advance
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>
> ------------------------------
>
> Message: 2
> Date: Wed, 20 Feb 2013 13:24:31 +0100
> From: Hermann Fuchs <hermann.fuchs at meduniwien.ac.at>
> To: gate-users at lists.opengatecollaboration.org
> Subject: Re: [Gate-users] ECAT and LMF installation in GATE 6.2
> Message-ID:
> 	<1361363071.23733.13.camel at strahlen41.strahlen.meduniwien.ac.at>
> Content-Type: text/plain; charset="UTF-8"
>
> Hi
>
> I presume you have compiled ecat before Gate6_2.
> If so, you have to specify the ecat path in ccmake...
> eg.
> ECAT7_HOME                       /opt/simulation/ecat7
> LMF_HOME                         /opt/simulation/lmf_3_0
>
> Cheers,
> Hermann
> On Wed, 2013-02-20 at 14:52 +0330, Saeed Heidary wrote:
>> Hi Gate users
>> I am trying to add ecat and lmf to my GATE.6.2
>> but the linking problem appears same  the previous versions!
>>
>>
>> first ; when I extract the ecat.tar and read the install text file,
>> after running the 'make depend'
>>  I have ;
>> [root at saeed2 ecat7]# make depend
>> makedepend -Dunix -O -I. ./*.c ./lib_compress/*.c
>> /bin/sh: makedepend: command not found
>> make: *** [depend] Error 127
>> [root at saeed2 ecat7]#
>>
>>
>> second when I do the routine mentioned in the installation guide
>> http://wiki.opengatecollaboration.org/index.php/New_Compilation_ProcedureV6.2
>>
>>
>> entering ;
>> /opt/simulation/ecat7
>> cp Makefile.unix Makefile
>> make
>> mkdir /opt/simulation/ecat7/include
>> cp *.h /opt/simulation/ecat7/include
>> mkdir lib
>> mkdir lib/Linux-g++
>> cp libecat.a lib/Linux-g++/
>> .
>> .
>> cd gate.6.2-build
>> ccmake ../gate_v6.2
>>    (configuring the paths and ecatHome )
>> make
>> make install
>>
>>
>> all things compile but Linkining error appears as the following;;
>>
>>
>> [100%] Building CXX object
>> CMakeFiles/Gate.dir/source/general/src/GateClockDependentMessenger.cc.o
>> Linking CXX executable Gate
>> /usr/bin/ld: cannot find -lecat
>> collect2: ld returned 1 exit status
>> make[2]: *** [Gate] Error 1
>> make[1]: *** [CMakeFiles/Gate.dir/all] Error 2
>> make: *** [all] Error 2
>> You have new mail in /var/spool/mail/root
>> [root at localhost gate.6.2-build]#
>>
>>
>> I am highly appreciated  if any one has a standard procedure to
>> install ecat and lmf;
>> Many thanks in advance
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
> --
> -------------
> DI Hermann Fuchs
> Christian Doppler Laboratory for Medical Radiation Research for Radiation
> Oncology
> Department of Radiation Oncology
> Medical University Vienna
> W?hringer G?rtel 18-20
> A-1090 Wien
>
> Tel.  + 43 / 1 / 40 400 7271
> Mail. hermann.fuchs at meduniwien.ac.at
>
>
>
> ------------------------------
>
> Message: 3
> Date: Thu, 21 Feb 2013 07:51:42 +0330
> From: Shahla Razaghi <shahla1988 at gmail.com>
> To: GATE-users-request <gate-users at lists.opengatecollaboration.org>
> Subject: [Gate-users] 32 bit or 64 bit OS for Gate v.6.1?
> Message-ID:
> 	<CANS-_3+FDdSkTgAKw9RXCpvd22pZ41TppucYzOMGxH0yn9o=1A at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Dear gate-users,
>
> I am trying to reinstall Gate v.6.1 on Ubuntu 12.04 but I encounter with
> frequent warning and error messages during installation process. After
> failing to figure out the cause of error messages, I thought that this
> problem would be do to OS system which is 32 bit. Is 64 bit OS mandatory
> for Gate installation?
>
> Thanks,
> --
>
> Shahla Razaghi
> Medical Radiation Engineering
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> ------------------------------
>
> Message: 4
> Date: Thu, 21 Feb 2013 10:52:41 +0100
> From: Hermann Fuchs <hermann.fuchs at meduniwien.ac.at>
> To: gate-users at lists.opengatecollaboration.org
> Subject: Re: [Gate-users] 32 bit or 64 bit OS for Gate v.6.1?
> Message-ID:
> 	<1361440361.15052.10.camel at strahlen41.strahlen.meduniwien.ac.at>
> Content-Type: text/plain; charset="UTF-8"
>
> Yes, you need a 64bit OS for Gate
>
> Cheers,
> Hermann
>
> On Thu, 2013-02-21 at 07:51 +0330, Shahla Razaghi wrote:
>> Dear gate-users,
>>
>> I am trying to reinstall Gate v.6.1 on Ubuntu 12.04 but I encounter
>> with frequent warning and error messages during installation process.
>> After failing to figure out the cause of error messages, I thought
>> that this problem would be do to OS system which is 32 bit. Is 64 bit
>> OS mandatory for Gate installation?
>>
>> Thanks,
>> --
>>
>> Shahla Razaghi
>> Medical Radiation Engineering
>>
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
> --
> -------------
> DI Hermann Fuchs
> Christian Doppler Laboratory for Medical Radiation Research for Radiation
> Oncology
> Department of Radiation Oncology
> Medical University Vienna
> W?hringer G?rtel 18-20
> A-1090 Wien
>
> Tel.  + 43 / 1 / 40 400 7271
> Mail. hermann.fuchs at meduniwien.ac.at
>
>
>
> ------------------------------
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.opengatecollaboration.org
> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>
> End of Gate-users Digest, Vol 81, Issue 15
> ******************************************
>