[Gate-users] run GATE by parallel computing?

[Marc Chamberland]

Hi Janice!

You might need to change the permissions on the Csl.submit file. For example, you could try this:

>chmod 777 ./Csl.submit

and see if you can run it afterwards.

Marc



__________________________


Marc Chamberland, MSc
PhD candidate
Department of Physics
Carleton University
Ottawa (ON)

Le 2012-02-01 à 12:44 AM, PONY＊ Janice a écrit :

> 
> Hello, follow up this question.
> 
> Before run gjs, I created a script, as follow:
> 
> #!/bin/bash
> # History:
> # 2012/02/01
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/gate/Progs/Gate/gate_v6.0_p01/cluster_tools/jobsplitter/tmp/Linux-g++/gjs
> 
> echo
> echo ---------------------- Job Info ------------------------------
> echo
> echo -e "CsI.mac                   \t"     $PBS_QUEUE
> echo -e "openPBS                 \t"    $PBS_JOBNAME
> echo -e "openpbs.script        \t"    $PBS_JOBID
> echo -e "/home/gate/Progs/Gate/gate_v6.0_p01/examples/example_CT/CT_CsI  \t"    $PBS_O_WORKDIR
> echo -e "Running on host     \t"    `hostname`
> echo -e "2012/1/30                   \t"    `date`
> echo
> cd $PBS_O_WORKDIR    
> echo $CLUSTERWORKDIR
> 
> echo
> echo ---------------------- Job Output ----------------------------
> echo
> 
> # H E R E you may set up your environment      <<<<<<<<<<  see include/my_environment.example
> . my_environment
> # executable 
> GC_GATE 
> 
> echo
> echo ----------------------- DONE ---------------------------------
> echo
> echo -e "2012/2/6                  \t"     `date`
> 
> exit 0
> 
> then, running with this command: gjs -n 10 -c openPBS -openPBSscript /home/gate/Progs/Gate/gate_v6.0_p01/examples/example_CT/CT_CsI CsI.mac, and then show a file named CsI.submit in CT_CsI folder. 
> 
> I think I have to run this file, typing command as : ./CsI.submit, but it can't run. 
> 
> What's wrong with my command? or other problem in my step?
> 
> 
> Best Regards,
> Janice
> 
>    		 	   		  
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