[Gate-users] run GATE by parallel computing?

PONY* Janice ponyjanice at hotmail.com
Wed Feb 1 06:44:22 CET 2012


Hello, follow up this question.

Before run gjs, I created a script, as follow:

#!/bin/bash
# History:
# 2012/02/01
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/gate/Progs/Gate/gate_v6.0_p01/cluster_tools/jobsplitter/tmp/Linux-g++/gjs

echo
echo ---------------------- Job Info ------------------------------
echo
echo -e "CsI.mac                   \t"     $PBS_QUEUE
echo -e "openPBS                 \t"    $PBS_JOBNAME
echo -e "openpbs.script        \t"    $PBS_JOBID
echo -e "/home/gate/Progs/Gate/gate_v6.0_p01/examples/example_CT/CT_CsI  \t"    $PBS_O_WORKDIR
echo -e "Running on host     \t"    `hostname`
echo -e "2012/1/30                   \t"    `date`
echo
cd $PBS_O_WORKDIR    
echo $CLUSTERWORKDIR

echo
echo ---------------------- Job Output ----------------------------
echo

# H E R E you may set up your environment      <<<<<<<<<<  see include/my_environment.example
. my_environment
# executable 
GC_GATE 

echo
echo ----------------------- DONE ---------------------------------
echo
echo -e "2012/2/6                  \t"     `date`

exit 0

then, running with this command: gjs -n 10 -c openPBS -openPBSscript /home/gate/Progs/Gate/gate_v6.0_p01/examples/example_CT/CT_CsI CsI.mac, and then show a file named CsI.submit in CT_CsI folder. 

I think I have to run this file, typing command as : ./CsI.submit, but it can't run. 

What's wrong with my command? or other problem in my step?


Best Regards,
Janice

    		 	   		  


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