[Gate-users] Trouble installing GATE

Fri Feb 11 15:49:24 CET 2011

Hi Tuan,

Your GATEHOME should be: /home/tuan/GATE_ROOT/gate_v6.0_p01, I think
In your PATH variable it's better:
export PATH=$PATH:$ROOTSYS/bin:$GATEHOME/bin

Kind Regards,
Didier

On 02/11/2011 03:41 PM, Tuan wrote:
> Hi,
>
> I thought I already set all the environment variables in the env_gate.sh
> file like so:
>
> export GATEHOME=/home/tuan/GATE_ROOT
> export G4INSTALL=/home/tuan/GATE_ROOT/geant4.9.2.p04
> export G4VERSION=9.2
> export ROOTSYS=/home/tuan/GATE_ROOT/root
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:
> $ROOTSYS/lib:/home/tuan/GATE_ROOT/2.0.4.2/lib
> export PATH=$PATH:$ROOTSYS/lib:$GATEHOME/bin/$G4SYSTEM
>
> Is that incorrect?  Is there something else I'm missing?
>
> Thanks,
> Tuan Huynh
>
>
>> Message: 5
>> Date: Thu, 10 Feb 2011 21:14:19 +0100
>> From: Alexandre Dupas<alexandre.dupas at gmail.com>
>> To: gate-users at lists.opengatecollaboration.org
>> Subject: Re: [Gate-users] Trouble installing GATE
>> Message-ID:
>> 	<AANLkTikWpT8beyrv0NxHwCPGcDFcya7zXTEfRN_Mb3jQ at mail.gmail.com>
>> Content-Type: text/plain; charset=UTF-8
>>
>> Hello,
>>
>> Actually, you have to define some environment variables to allow the
>> build system to retrieve the root install directory.
>>
>> The main variable is ROOTSYS that you can define using
>>
>> export ROOTSYS=/path/to/root/installation/directory
>>
>> See for more details the "Setting environment variable" section of the
>> following page : http://minos.phy.bnl.gov/software/rug/rug26.html
>>
>> I hope this help,
>>
>> Best regards,
>> Alexandre
>> --
>> Alexandre Dupas
>> Postdoctoral Research Fellow
>> INSERM U698, Bich?t M?decine Nucl?aire
>>
>> 2011/2/10 Tuan<huynht4 at mcmaster.ca>:
>>> Hi,
>>>
>>> ? ? I. I've been trying to install GATE on a new system. ?I've followed
>>> ? ? ? ?the instructions on the Installation Guide to the letter but I
>>> ? ? ? ?keep getting this error when I use make:
>>>
>>> tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$ source env_gate.sh
>>>
>>> The current value of G4INSTALL is: /home/tuan/GATE_ROOT/geant4.9.2.p04
>>> The current value of G4VERSION is: 9.2
>>>
>>> Launching Geant4 configuration
>>> script /home/tuan/GATE_ROOT/geant4.9.2.p04/env.sh
>>>
>>> On this machine the G4SYSTEM=Linux-g++
>>> On this machine the G4INSTALL=/home/tuan/GATE_ROOT/geant4.9.2.p04
>>> On this machine the
>>> G4INCLUDE=/home/tuan/GATE_ROOT/geant4.9.2.p04/include/
>>> On this machine the G4LIB=/home/tuan/GATE_ROOT/geant4.9.2.p04/lib
>>> On this machine the
>>> G4LEVELGAMMADATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/PhotonEvaporation2.0
>>> On this machine the
>>> G4RADIOACTIVEDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/RadioactiveDecay3.2
>>> On this machine the
>>> G4LEDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4EMLOW6.2
>>> On this machine the
>>> G4NEUTRONHPDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4NDL3.13
>>> On this machine the
>>> G4ABLADATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4ABLA3.0
>>> On this machine the CLHEP_BASE_DIR=/home/tuan/GATE_ROOT/2.0.4.2
>>> On this machine the
>>> CLHEP_INCLUDE_DIR=/home/tuan/GATE_ROOT/2.0.4.2/include
>>> On this machine the CLHEP_LIB_DIR=/home/tuan/GATE_ROOT/2.0.4.2/lib
>>> On this machine the CLHEP_LIB=CLHEP
>>> On this machine the G4UI_USE_TCSH=1
>>> On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
>>> On this machine the G4VIS_USE_OPENGLX=1
>>> On this machine the XMFLAGS=
>>> On this machine the XMLIBS=
>>> On this machine the XMFLAGS=
>>> On this machine the XAWFLAGS=
>>> On this machine the XAWLIBS=
>>> On this machine the G4LIB_BUILD_STATIC=1
>>> On this machine the G4LIB_USE_GRANULAR=1
>>>
>>> Configuring GATE options
>>>
>>> G4WORKDIR set to .
>>> G4TMP set to ./tmp
>>> G4BIN set to ./bin
>>> Data analysis and output features enabled
>>> Ascii data output enabled
>>> Transport and generation of optical photons is disabled
>>> Checking your LD_LIBRARY_PATH variable...
>>> ?==>  OK: /home/tuan/GATE_ROOT/root/lib is already in your
>>> LD_LIBRARY_PATH
>>> Use of ROOT enabled
>>> ROOT real-time plotter disabled
>>> LMF data output disabled
>>> ECAT7 data output disabled
>>> GATEHOME is set to /home/tuan/GATE_ROOT
>>> Checking your path variable...
>>> ?==>  OK: /home/tuan/GATE_ROOT/bin/Linux-g++ added to your path variable
>>> Checking your LD_LIBRARY_PATH variable...
>>> ?==>  OK: /home/tuan/GATE_ROOT/tmp/Linux-g++/Gate added to your path
>>> variable
>>> G4VERSION9_2 is set: GATE is compatible with the geant4 version 9.2
>>>
>>> Done
>>>
>>> tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$ make
>>> Making dependency for file Gate.cc ...
>>> ./source/physics/include/GateSourcePhaseSpace.hh:14: fatal error:
>>> TROOT.h: No such file or directory
>>> compilation terminated.
>>> Entering source/arf ...
>>> GNUmakefile:8: *** missing separator. ?Stop.
>>> source/arf finished
>>> Entering source/geometry ...
>>> GNUmakefile:8: *** missing separator. ?Stop.
>>> source/geometry finished
>>> Entering source/general ...
>>> GNUmakefile:8: *** missing separator. ?Stop.
>>> source/general finished
>>> Entering source/digits_hits ...
>>> GNUmakefile:8: *** missing separator. ?Stop.
>>> source/digits_hits finished
>>> Entering source/physics ...
>>> GNUmakefile:8: *** missing separator. ?Stop.
>>> source/physics finished
>>> Creating shared library tmp/Linux-g++/Gate/libGate.so ...
>>> g++: *.o: No such file or directory
>>> make: *** [tmp/Linux-g++/Gate/libGate.so] Error 1
>>> tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$
>>>
>>> It seems like Root wasn't installed properly so I've tried reinstalling
>>> it a few times (different versions as well) to no avail. ?What could be
>>> the problem?
>>>
>>> Thanks,
>>> Tuan Huynh
>>>
>>>
>>> _______________________________________________
>>> Gate-users mailing list
>>> Gate-users at lists.opengatecollaboration.org
>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>>
>
>
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-- 
----------------------------------------------------------------
Didier BENOIT, GATE Engineer

Imagerie et Modélisation en Neurobiologie et Cancérologie (IMNC)
IMNC – UMR 8165 CNRS – Université Paris 7 – Université Paris 11
Campus d’Orsay
Bâtiment 440
91405 ORSAY Cedex

Tél : (33) 1 69 15 68 76
E-mail : benoit at imnc.in2p3.fr
http://www.imnc.in2p3.fr
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