[Gate-users] Trouble installing GATE

[Tuan]

Hi,

I thought I already set all the environment variables in the env_gate.sh
file like so:

export GATEHOME=/home/tuan/GATE_ROOT
export G4INSTALL=/home/tuan/GATE_ROOT/geant4.9.2.p04
export G4VERSION=9.2
export ROOTSYS=/home/tuan/GATE_ROOT/root
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:
$ROOTSYS/lib:/home/tuan/GATE_ROOT/2.0.4.2/lib
export PATH=$PATH:$ROOTSYS/lib:$GATEHOME/bin/$G4SYSTEM

Is that incorrect?  Is there something else I'm missing?

Thanks,
Tuan Huynh


> Message: 5
> Date: Thu, 10 Feb 2011 21:14:19 +0100
> From: Alexandre Dupas <alexandre.dupas at gmail.com>
> To: gate-users at lists.opengatecollaboration.org
> Subject: Re: [Gate-users] Trouble installing GATE
> Message-ID:
> 	<AANLkTikWpT8beyrv0NxHwCPGcDFcya7zXTEfRN_Mb3jQ at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
> 
> Hello,
> 
> Actually, you have to define some environment variables to allow the
> build system to retrieve the root install directory.
> 
> The main variable is ROOTSYS that you can define using
> 
> export ROOTSYS=/path/to/root/installation/directory
> 
> See for more details the "Setting environment variable" section of the
> following page : http://minos.phy.bnl.gov/software/rug/rug26.html
> 
> I hope this help,
> 
> Best regards,
> Alexandre
> --
> Alexandre Dupas
> Postdoctoral Research Fellow
> INSERM U698, Bich?t M?decine Nucl?aire
> 
> 2011/2/10 Tuan <huynht4 at mcmaster.ca>:
> > Hi,
> >
> > ? ? I. I've been trying to install GATE on a new system. ?I've followed
> > ? ? ? ?the instructions on the Installation Guide to the letter but I
> > ? ? ? ?keep getting this error when I use make:
> >
> > tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$ source env_gate.sh
> >
> > The current value of G4INSTALL is: /home/tuan/GATE_ROOT/geant4.9.2.p04
> > The current value of G4VERSION is: 9.2
> >
> > Launching Geant4 configuration
> > script /home/tuan/GATE_ROOT/geant4.9.2.p04/env.sh
> >
> > On this machine the G4SYSTEM=Linux-g++
> > On this machine the G4INSTALL=/home/tuan/GATE_ROOT/geant4.9.2.p04
> > On this machine the
> > G4INCLUDE=/home/tuan/GATE_ROOT/geant4.9.2.p04/include/
> > On this machine the G4LIB=/home/tuan/GATE_ROOT/geant4.9.2.p04/lib
> > On this machine the
> > G4LEVELGAMMADATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/PhotonEvaporation2.0
> > On this machine the
> > G4RADIOACTIVEDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/RadioactiveDecay3.2
> > On this machine the
> > G4LEDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4EMLOW6.2
> > On this machine the
> > G4NEUTRONHPDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4NDL3.13
> > On this machine the
> > G4ABLADATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4ABLA3.0
> > On this machine the CLHEP_BASE_DIR=/home/tuan/GATE_ROOT/2.0.4.2
> > On this machine the
> > CLHEP_INCLUDE_DIR=/home/tuan/GATE_ROOT/2.0.4.2/include
> > On this machine the CLHEP_LIB_DIR=/home/tuan/GATE_ROOT/2.0.4.2/lib
> > On this machine the CLHEP_LIB=CLHEP
> > On this machine the G4UI_USE_TCSH=1
> > On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
> > On this machine the G4VIS_USE_OPENGLX=1
> > On this machine the XMFLAGS=
> > On this machine the XMLIBS=
> > On this machine the XMFLAGS=
> > On this machine the XAWFLAGS=
> > On this machine the XAWLIBS=
> > On this machine the G4LIB_BUILD_STATIC=1
> > On this machine the G4LIB_USE_GRANULAR=1
> >
> > Configuring GATE options
> >
> > G4WORKDIR set to .
> > G4TMP set to ./tmp
> > G4BIN set to ./bin
> > Data analysis and output features enabled
> > Ascii data output enabled
> > Transport and generation of optical photons is disabled
> > Checking your LD_LIBRARY_PATH variable...
> > ?==> OK: /home/tuan/GATE_ROOT/root/lib is already in your
> > LD_LIBRARY_PATH
> > Use of ROOT enabled
> > ROOT real-time plotter disabled
> > LMF data output disabled
> > ECAT7 data output disabled
> > GATEHOME is set to /home/tuan/GATE_ROOT
> > Checking your path variable...
> > ?==> OK: /home/tuan/GATE_ROOT/bin/Linux-g++ added to your path variable
> > Checking your LD_LIBRARY_PATH variable...
> > ?==> OK: /home/tuan/GATE_ROOT/tmp/Linux-g++/Gate added to your path
> > variable
> > G4VERSION9_2 is set: GATE is compatible with the geant4 version 9.2
> >
> > Done
> >
> > tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$ make
> > Making dependency for file Gate.cc ...
> > ./source/physics/include/GateSourcePhaseSpace.hh:14: fatal error:
> > TROOT.h: No such file or directory
> > compilation terminated.
> > Entering source/arf ...
> > GNUmakefile:8: *** missing separator. ?Stop.
> > source/arf finished
> > Entering source/geometry ...
> > GNUmakefile:8: *** missing separator. ?Stop.
> > source/geometry finished
> > Entering source/general ...
> > GNUmakefile:8: *** missing separator. ?Stop.
> > source/general finished
> > Entering source/digits_hits ...
> > GNUmakefile:8: *** missing separator. ?Stop.
> > source/digits_hits finished
> > Entering source/physics ...
> > GNUmakefile:8: *** missing separator. ?Stop.
> > source/physics finished
> > Creating shared library tmp/Linux-g++/Gate/libGate.so ...
> > g++: *.o: No such file or directory
> > make: *** [tmp/Linux-g++/Gate/libGate.so] Error 1
> > tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$
> >
> > It seems like Root wasn't installed properly so I've tried reinstalling
> > it a few times (different versions as well) to no avail. ?What could be
> > the problem?
> >
> > Thanks,
> > Tuan Huynh
> >
> >
> > _______________________________________________
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> > Gate-users at lists.opengatecollaboration.org
> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
> >