[Gate-users] Trouble installing GATE

[Alexandre Dupas]

Hello,

Actually, you have to define some environment variables to allow the
build system to retrieve the root install directory.

The main variable is ROOTSYS that you can define using

export ROOTSYS=/path/to/root/installation/directory

See for more details the "Setting environment variable" section of the
following page : http://minos.phy.bnl.gov/software/rug/rug26.html

I hope this help,

Best regards,
Alexandre
--
Alexandre Dupas
Postdoctoral Research Fellow
INSERM U698, Bichât Médecine Nucléaire

2011/2/10 Tuan <huynht4 at mcmaster.ca>:
> Hi,
>
>     I. I've been trying to install GATE on a new system.  I've followed
>        the instructions on the Installation Guide to the letter but I
>        keep getting this error when I use make:
>
> tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$ source env_gate.sh
>
> The current value of G4INSTALL is: /home/tuan/GATE_ROOT/geant4.9.2.p04
> The current value of G4VERSION is: 9.2
>
> Launching Geant4 configuration
> script /home/tuan/GATE_ROOT/geant4.9.2.p04/env.sh
>
> On this machine the G4SYSTEM=Linux-g++
> On this machine the G4INSTALL=/home/tuan/GATE_ROOT/geant4.9.2.p04
> On this machine the
> G4INCLUDE=/home/tuan/GATE_ROOT/geant4.9.2.p04/include/
> On this machine the G4LIB=/home/tuan/GATE_ROOT/geant4.9.2.p04/lib
> On this machine the
> G4LEVELGAMMADATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/PhotonEvaporation2.0
> On this machine the
> G4RADIOACTIVEDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/RadioactiveDecay3.2
> On this machine the
> G4LEDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4EMLOW6.2
> On this machine the
> G4NEUTRONHPDATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4NDL3.13
> On this machine the
> G4ABLADATA=/home/tuan/GATE_ROOT/geant4.9.2.p04/data/G4ABLA3.0
> On this machine the CLHEP_BASE_DIR=/home/tuan/GATE_ROOT/2.0.4.2
> On this machine the
> CLHEP_INCLUDE_DIR=/home/tuan/GATE_ROOT/2.0.4.2/include
> On this machine the CLHEP_LIB_DIR=/home/tuan/GATE_ROOT/2.0.4.2/lib
> On this machine the CLHEP_LIB=CLHEP
> On this machine the G4UI_USE_TCSH=1
> On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
> On this machine the G4VIS_USE_OPENGLX=1
> On this machine the XMFLAGS=
> On this machine the XMLIBS=
> On this machine the XMFLAGS=
> On this machine the XAWFLAGS=
> On this machine the XAWLIBS=
> On this machine the G4LIB_BUILD_STATIC=1
> On this machine the G4LIB_USE_GRANULAR=1
>
> Configuring GATE options
>
> G4WORKDIR set to .
> G4TMP set to ./tmp
> G4BIN set to ./bin
> Data analysis and output features enabled
> Ascii data output enabled
> Transport and generation of optical photons is disabled
> Checking your LD_LIBRARY_PATH variable...
>  ==> OK: /home/tuan/GATE_ROOT/root/lib is already in your
> LD_LIBRARY_PATH
> Use of ROOT enabled
> ROOT real-time plotter disabled
> LMF data output disabled
> ECAT7 data output disabled
> GATEHOME is set to /home/tuan/GATE_ROOT
> Checking your path variable...
>  ==> OK: /home/tuan/GATE_ROOT/bin/Linux-g++ added to your path variable
> Checking your LD_LIBRARY_PATH variable...
>  ==> OK: /home/tuan/GATE_ROOT/tmp/Linux-g++/Gate added to your path
> variable
> G4VERSION9_2 is set: GATE is compatible with the geant4 version 9.2
>
> Done
>
> tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$ make
> Making dependency for file Gate.cc ...
> ./source/physics/include/GateSourcePhaseSpace.hh:14: fatal error:
> TROOT.h: No such file or directory
> compilation terminated.
> Entering source/arf ...
> GNUmakefile:8: *** missing separator.  Stop.
> source/arf finished
> Entering source/geometry ...
> GNUmakefile:8: *** missing separator.  Stop.
> source/geometry finished
> Entering source/general ...
> GNUmakefile:8: *** missing separator.  Stop.
> source/general finished
> Entering source/digits_hits ...
> GNUmakefile:8: *** missing separator.  Stop.
> source/digits_hits finished
> Entering source/physics ...
> GNUmakefile:8: *** missing separator.  Stop.
> source/physics finished
> Creating shared library tmp/Linux-g++/Gate/libGate.so ...
> g++: *.o: No such file or directory
> make: *** [tmp/Linux-g++/Gate/libGate.so] Error 1
> tuan at tuan-Inspiron-560:~/GATE_ROOT/gate_v6.0_p01$
>
> It seems like Root wasn't installed properly so I've tried reinstalling
> it a few times (different versions as well) to no avail.  What could be
> the problem?
>
> Thanks,
> Tuan Huynh
>
>
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